Gene : Glyma.20G117600 G. max Wm82.a2.v1
Defline:  (1 of 5) 6.1.1.16 - Cysteine--tRNA ligase / Cysteinyl-tRNA synthetase Genomic Order:  1176
Name:  ? Glyma.20G117600 Secondary Identifier:  ? PAC:30522183
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G117600 0.5kb upstream 0.5kb upstream 8667 true Chr20: 36024985-36033651 Glycine max
Glyma.20G117600 0.5kb upstream 0.5kb upstream 500 false Chr20: 36024985-36025484 Glycine max
Glyma.20G117600 0.5kb downstream 0.5kb downstream 8667 true Chr20: 36025485-36034151 Glycine max
Glyma.20G117600 0.5kb downstream 0.5kb downstream 500 false Chr20: 36033652-36034151 Glycine max
Glyma.20G117600 1.0kb upstream 1.0kb upstream 9167 true Chr20: 36024485-36033651 Glycine max
Glyma.20G117600 1.0kb upstream 1.0kb upstream 1000 false Chr20: 36024485-36025484 Glycine max
Glyma.20G117600 1.0kb downstream 1.0kb downstream 9167 true Chr20: 36025485-36034651 Glycine max
Glyma.20G117600 1.0kb downstream 1.0kb downstream 1000 false Chr20: 36033652-36034651 Glycine max
Glyma.20G117600 2.0kb upstream 2.0kb upstream 10167 true Chr20: 36023485-36033651 Glycine max
Glyma.20G117600 2.0kb upstream 2.0kb upstream 2000 false Chr20: 36023485-36025484 Glycine max
Glyma.20G117600 2.0kb downstream 2.0kb downstream 10167 true Chr20: 36025485-36035651 Glycine max
Glyma.20G117600 2.0kb downstream 2.0kb downstream 2000 false Chr20: 36033652-36035651 Glycine max
Glyma.20G117600 5.0kb upstream 5.0kb upstream 13167 true Chr20: 36020485-36033651 Glycine max
Glyma.20G117600 5.0kb upstream 5.0kb upstream 5000 false Chr20: 36020485-36025484 Glycine max
Glyma.20G117600 5.0kb downstream 5.0kb downstream 13167 true Chr20: 36025485-36038651 Glycine max
Glyma.20G117600 5.0kb downstream 5.0kb downstream 5000 false Chr20: 36033652-36038651 Glycine max
Glyma.20G117600 10.0kb upstream 10.0kb upstream 18167 true Chr20: 36015485-36033651 Glycine max
Glyma.20G117600 10.0kb upstream 10.0kb upstream 10000 false Chr20: 36015485-36025484 Glycine max
Glyma.20G117600 10.0kb downstream 10.0kb downstream 18167 true Chr20: 36025485-36043651 Glycine max
Glyma.20G117600 10.0kb downstream 10.0kb downstream 10000 false Chr20: 36033652-36043651 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306399 5265 Fabidae View MSA
124063129 5270 Rosid View MSA
123736819 5271 Pentapetalae View MSA
122791424 5272 Eudicot View MSA
122050932 5273 Angiosperm View MSA
121350340 5274 Embryophyte View MSA
123427761 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.7506 0.0 43.1862   High
cufflinks 7.54302 0.0 31.2237   Low
cufflinks 6.64245 0.0 27.4338   Low
cufflinks 8.70111 0.0 35.5251    
cufflinks 9.04243 0.0 31.8125    
cufflinks 10.3271 0.0 41.8503   High
cufflinks 8.79459 0.0 35.7928    
cufflinks 8.60371 0.0 34.9307    
cufflinks 9.36205 0.0 32.7298    
cufflinks 1.209        
cufflinks 0.598       Low
cufflinks 1.472        
cufflinks 2.15       High
cufflinks 2.755       High
cufflinks 0.767       Low
cufflinks 1.285        
cufflinks 1.053        
cufflinks 1.769        
cufflinks 1.43        
cufflinks 1.381        
cufflinks 0.925        
cufflinks 1.338        
cufflinks 1.353        
cufflinks 0.855        
cufflinks 1.276        
cufflinks 0.949        

0 Strain