Gene : Glyma.20G111000 G. max Wm82.a2.v1
Defline:  (1 of 12) PF11960 - Domain of unknown function (DUF3474) (DUF3474) Genomic Order:  1110
Name:  ? Glyma.20G111000 Secondary Identifier:  ? PAC:30519470
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5995 Glycine max pathologic  
Gmax PWY-762 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G111000 0.5kb upstream 0.5kb upstream 3934 true Chr20: 35315130-35319063 Glycine max
Glyma.20G111000 0.5kb upstream 0.5kb upstream 500 false Chr20: 35315130-35315629 Glycine max
Glyma.20G111000 0.5kb downstream 0.5kb downstream 3934 true Chr20: 35315630-35319563 Glycine max
Glyma.20G111000 0.5kb downstream 0.5kb downstream 500 false Chr20: 35319064-35319563 Glycine max
Glyma.20G111000 1.0kb upstream 1.0kb upstream 4434 true Chr20: 35314630-35319063 Glycine max
Glyma.20G111000 1.0kb upstream 1.0kb upstream 1000 false Chr20: 35314630-35315629 Glycine max
Glyma.20G111000 1.0kb downstream 1.0kb downstream 4434 true Chr20: 35315630-35320063 Glycine max
Glyma.20G111000 1.0kb downstream 1.0kb downstream 1000 false Chr20: 35319064-35320063 Glycine max
Glyma.20G111000 2.0kb upstream 2.0kb upstream 5434 true Chr20: 35313630-35319063 Glycine max
Glyma.20G111000 2.0kb upstream 2.0kb upstream 2000 false Chr20: 35313630-35315629 Glycine max
Glyma.20G111000 2.0kb downstream 2.0kb downstream 5434 true Chr20: 35315630-35321063 Glycine max
Glyma.20G111000 2.0kb downstream 2.0kb downstream 2000 false Chr20: 35319064-35321063 Glycine max
Glyma.20G111000 5.0kb upstream 5.0kb upstream 8434 true Chr20: 35310630-35319063 Glycine max
Glyma.20G111000 5.0kb upstream 5.0kb upstream 5000 false Chr20: 35310630-35315629 Glycine max
Glyma.20G111000 5.0kb downstream 5.0kb downstream 8434 true Chr20: 35315630-35324063 Glycine max
Glyma.20G111000 5.0kb downstream 5.0kb downstream 5000 false Chr20: 35319064-35324063 Glycine max
Glyma.20G111000 10.0kb upstream 10.0kb upstream 13434 true Chr20: 35305630-35319063 Glycine max
Glyma.20G111000 10.0kb upstream 10.0kb upstream 10000 false Chr20: 35305630-35315629 Glycine max
Glyma.20G111000 10.0kb downstream 10.0kb downstream 13434 true Chr20: 35315630-35329063 Glycine max
Glyma.20G111000 10.0kb downstream 10.0kb downstream 10000 false Chr20: 35319064-35329063 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041215 5273 Angiosperm View MSA
122255277 5265 Fabidae View MSA
124074119 5270 Rosid View MSA
123747966 5271 Pentapetalae View MSA
122789327 5272 Eudicot View MSA
121347269 5274 Embryophyte View MSA
123426688 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 2.68734 0.0 15.8607    
cufflinks 0.133913 0.0 0.53377 Low  
cufflinks 10.032 0.0 38.1429    
cufflinks 0.892427 0.0 6.6731    
cufflinks 0.391842 0.0 3.01139    
cufflinks 3883.77 3865.93 3901.6 High High
cufflinks 0.0188931 0.0 0.0983694 Low Low
cufflinks 0.344043 0.0 2.6081    
cufflinks 0.003     Low Low
cufflinks 0.095        
cufflinks 0.002     Low Low
cufflinks 0.063     Low  
cufflinks 0.26       High
cufflinks 0.026     Low  
cufflinks 0.003     Low Low
cufflinks 0.067     Low  
cufflinks 0.002     Low Low
cufflinks 0.068     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.108        
cufflinks 0.002     Low Low
cufflinks 0.045     Low  
cufflinks 0.024     Low  
cufflinks 0.002     Low Low
cufflinks 0.071        

0 Strain