Gene : Glyma.20G112400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR33057:SF1 - OVATE FAMILY PROTEIN 13 Genomic Order:  1124
Name:  ? Glyma.20G112400 Secondary Identifier:  ? PAC:30523124
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Ontology Annotation Displayer

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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G112400 0.5kb upstream 0.5kb upstream 1407 true Chr20: 35457898-35459304 Glycine max
Glyma.20G112400 0.5kb upstream 0.5kb upstream 500 false Chr20: 35457898-35458397 Glycine max
Glyma.20G112400 0.5kb downstream 0.5kb downstream 1407 true Chr20: 35458398-35459804 Glycine max
Glyma.20G112400 0.5kb downstream 0.5kb downstream 500 false Chr20: 35459305-35459804 Glycine max
Glyma.20G112400 1.0kb upstream 1.0kb upstream 1907 true Chr20: 35457398-35459304 Glycine max
Glyma.20G112400 1.0kb upstream 1.0kb upstream 1000 false Chr20: 35457398-35458397 Glycine max
Glyma.20G112400 1.0kb downstream 1.0kb downstream 1907 true Chr20: 35458398-35460304 Glycine max
Glyma.20G112400 1.0kb downstream 1.0kb downstream 1000 false Chr20: 35459305-35460304 Glycine max
Glyma.20G112400 2.0kb upstream 2.0kb upstream 2907 true Chr20: 35456398-35459304 Glycine max
Glyma.20G112400 2.0kb upstream 2.0kb upstream 2000 false Chr20: 35456398-35458397 Glycine max
Glyma.20G112400 2.0kb downstream 2.0kb downstream 2907 true Chr20: 35458398-35461304 Glycine max
Glyma.20G112400 2.0kb downstream 2.0kb downstream 2000 false Chr20: 35459305-35461304 Glycine max
Glyma.20G112400 5.0kb upstream 5.0kb upstream 5907 true Chr20: 35453398-35459304 Glycine max
Glyma.20G112400 5.0kb upstream 5.0kb upstream 5000 false Chr20: 35453398-35458397 Glycine max
Glyma.20G112400 5.0kb downstream 5.0kb downstream 5907 true Chr20: 35458398-35464304 Glycine max
Glyma.20G112400 5.0kb downstream 5.0kb downstream 5000 false Chr20: 35459305-35464304 Glycine max
Glyma.20G112400 10.0kb upstream 10.0kb upstream 10907 true Chr20: 35448398-35459304 Glycine max
Glyma.20G112400 10.0kb upstream 10.0kb upstream 10000 false Chr20: 35448398-35458397 Glycine max
Glyma.20G112400 10.0kb downstream 10.0kb downstream 10907 true Chr20: 35458398-35469304 Glycine max
Glyma.20G112400 10.0kb downstream 10.0kb downstream 10000 false Chr20: 35459305-35469304 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303843 5265 Fabidae View MSA
124071458 5270 Rosid View MSA
123749654 5271 Pentapetalae View MSA
122787439 5272 Eudicot View MSA
122050214 5273 Angiosperm View MSA
121311801 5274 Embryophyte View MSA
123349046 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.552099 0.0 2.10392   Low
cufflinks 9.29594 0.0 27.4079   High
cufflinks 1.70581 0.0 6.11796    
cufflinks 12.3133 0.0 35.0028   High
cufflinks 3.21215 0.0 10.9518    
cufflinks 2.8698 0.0 9.88715    
cufflinks 0.375716 0.0 1.45669   Low
cufflinks 1.97094 0.0 6.99683    
cufflinks 1.302 0.0 4.75792    
cufflinks 1.947        
cufflinks 0.11       Low
cufflinks 4.876        
cufflinks 4.047        
cufflinks 3.855        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 4.268        
cufflinks 0.325       Low
cufflinks 16.892     High High
cufflinks 8.037     High  
cufflinks 4.779        
cufflinks 0.097       Low
cufflinks 4.956        
cufflinks 5.773        
cufflinks 0.401        
cufflinks 4.161        
cufflinks 0.148       Low

0 Strain