Gene : Glyma.20G102600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12265:SF0 - TRANSMEMBRANE PROTEIN 53 Genomic Order:  1026
Name:  ? Glyma.20G102600 Secondary Identifier:  ? PAC:30522346
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G102600 0.5kb upstream 0.5kb upstream 3161 true Chr20: 34553759-34556919 Glycine max
Glyma.20G102600 0.5kb upstream 0.5kb upstream 500 false Chr20: 34556420-34556919 Glycine max
Glyma.20G102600 0.5kb downstream 0.5kb downstream 3161 true Chr20: 34553259-34556419 Glycine max
Glyma.20G102600 0.5kb downstream 0.5kb downstream 500 false Chr20: 34553259-34553758 Glycine max
Glyma.20G102600 1.0kb upstream 1.0kb upstream 3661 true Chr20: 34553759-34557419 Glycine max
Glyma.20G102600 1.0kb upstream 1.0kb upstream 1000 false Chr20: 34556420-34557419 Glycine max
Glyma.20G102600 1.0kb downstream 1.0kb downstream 3661 true Chr20: 34552759-34556419 Glycine max
Glyma.20G102600 1.0kb downstream 1.0kb downstream 1000 false Chr20: 34552759-34553758 Glycine max
Glyma.20G102600 2.0kb upstream 2.0kb upstream 4661 true Chr20: 34553759-34558419 Glycine max
Glyma.20G102600 2.0kb upstream 2.0kb upstream 2000 false Chr20: 34556420-34558419 Glycine max
Glyma.20G102600 2.0kb downstream 2.0kb downstream 4661 true Chr20: 34551759-34556419 Glycine max
Glyma.20G102600 2.0kb downstream 2.0kb downstream 2000 false Chr20: 34551759-34553758 Glycine max
Glyma.20G102600 5.0kb upstream 5.0kb upstream 7661 true Chr20: 34553759-34561419 Glycine max
Glyma.20G102600 5.0kb upstream 5.0kb upstream 5000 false Chr20: 34556420-34561419 Glycine max
Glyma.20G102600 5.0kb downstream 5.0kb downstream 7661 true Chr20: 34548759-34556419 Glycine max
Glyma.20G102600 5.0kb downstream 5.0kb downstream 5000 false Chr20: 34548759-34553758 Glycine max
Glyma.20G102600 10.0kb upstream 10.0kb upstream 12661 true Chr20: 34553759-34566419 Glycine max
Glyma.20G102600 10.0kb upstream 10.0kb upstream 10000 false Chr20: 34556420-34566419 Glycine max
Glyma.20G102600 10.0kb downstream 10.0kb downstream 12661 true Chr20: 34543759-34556419 Glycine max
Glyma.20G102600 10.0kb downstream 10.0kb downstream 10000 false Chr20: 34543759-34553758 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302662 5265 Fabidae View MSA
124067477 5270 Rosid View MSA
123747198 5271 Pentapetalae View MSA
122786778 5272 Eudicot View MSA
122048979 5273 Angiosperm View MSA
121347494 5274 Embryophyte View MSA
123425038 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.00047 0.0 19.9892    
cufflinks 2.0972 0.0 7.05018    
cufflinks 48.6346 0.0 134.319 High High
cufflinks 1.74767 0.0 5.99107    
cufflinks 2.1306 0.0 7.14327    
cufflinks 20.0787 0.0 53.5942   High
cufflinks 0.670462 0.0 2.46823   Low
cufflinks 2.06468 0.0 6.94108    
cufflinks 1.7931 0.0 6.1271    
cufflinks 13.706     High High
cufflinks 5.025        
cufflinks 9.977     High  
cufflinks 4.865        
cufflinks 1.913       Low
cufflinks 0.749       Low
cufflinks 4.985        
cufflinks 57.873     High High
cufflinks 6.361        
cufflinks 2.176        
cufflinks 3.151        
cufflinks 3.313        
cufflinks 3.999        
cufflinks 6.292        
cufflinks 7.011     High  
cufflinks 4.427        
cufflinks 11.644     High  

0 Strain