Gene : Glyma.20G104200 G. max Wm82.a2.v1
Defline:  (1 of 57) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  1042
Name:  ? Glyma.20G104200 Secondary Identifier:  ? PAC:30520364
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G104200 0.5kb upstream 0.5kb upstream 4633 true Chr20: 34663836-34668468 Glycine max
Glyma.20G104200 0.5kb upstream 0.5kb upstream 500 false Chr20: 34663836-34664335 Glycine max
Glyma.20G104200 0.5kb downstream 0.5kb downstream 4633 true Chr20: 34664336-34668968 Glycine max
Glyma.20G104200 0.5kb downstream 0.5kb downstream 500 false Chr20: 34668469-34668968 Glycine max
Glyma.20G104200 1.0kb upstream 1.0kb upstream 5133 true Chr20: 34663336-34668468 Glycine max
Glyma.20G104200 1.0kb upstream 1.0kb upstream 1000 false Chr20: 34663336-34664335 Glycine max
Glyma.20G104200 1.0kb downstream 1.0kb downstream 5133 true Chr20: 34664336-34669468 Glycine max
Glyma.20G104200 1.0kb downstream 1.0kb downstream 1000 false Chr20: 34668469-34669468 Glycine max
Glyma.20G104200 2.0kb upstream 2.0kb upstream 6133 true Chr20: 34662336-34668468 Glycine max
Glyma.20G104200 2.0kb upstream 2.0kb upstream 2000 false Chr20: 34662336-34664335 Glycine max
Glyma.20G104200 2.0kb downstream 2.0kb downstream 6133 true Chr20: 34664336-34670468 Glycine max
Glyma.20G104200 2.0kb downstream 2.0kb downstream 2000 false Chr20: 34668469-34670468 Glycine max
Glyma.20G104200 5.0kb upstream 5.0kb upstream 9133 true Chr20: 34659336-34668468 Glycine max
Glyma.20G104200 5.0kb upstream 5.0kb upstream 5000 false Chr20: 34659336-34664335 Glycine max
Glyma.20G104200 5.0kb downstream 5.0kb downstream 9133 true Chr20: 34664336-34673468 Glycine max
Glyma.20G104200 5.0kb downstream 5.0kb downstream 5000 false Chr20: 34668469-34673468 Glycine max
Glyma.20G104200 10.0kb upstream 10.0kb upstream 14133 true Chr20: 34654336-34668468 Glycine max
Glyma.20G104200 10.0kb upstream 10.0kb upstream 10000 false Chr20: 34654336-34664335 Glycine max
Glyma.20G104200 10.0kb downstream 10.0kb downstream 14133 true Chr20: 34664336-34678468 Glycine max
Glyma.20G104200 10.0kb downstream 10.0kb downstream 10000 false Chr20: 34668469-34678468 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302830 5265 Fabidae View MSA
124063102 5270 Rosid View MSA
123740388 5271 Pentapetalae View MSA
122790856 5272 Eudicot View MSA
122046765 5273 Angiosperm View MSA
121310656 5274 Embryophyte View MSA
123348085 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.62839 0.0 7.44633   High
cufflinks 1.4887 0.0 4.54447    
cufflinks 0.982982 0.0 3.17785    
cufflinks 1.44021 0.0 4.40995    
cufflinks 1.13152 0.0 3.58652    
cufflinks 0.307002 0.0 1.1121   Low
cufflinks 1.06549 0.0 3.40649    
cufflinks 1.15969 0.0 3.66556    
cufflinks 1.19882 0.0 3.76834    
cufflinks 0.972        
cufflinks 0.379       Low
cufflinks 2.183        
cufflinks 1.713        
cufflinks 1.99        
cufflinks 1.017        
cufflinks 2.53        
cufflinks 0.544       Low
cufflinks 2.148        
cufflinks 2.735        
cufflinks 2.659        
cufflinks 0.277       Low
cufflinks 2.779        
cufflinks 2.201        
cufflinks 0.449       Low
cufflinks 2.93       High
cufflinks 0.482       Low

0 Strain