Gene : Glyma.20G105400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31618:SF1 - MECHANOSENSITIVE ION CHANNEL PROTEIN 6-RELATED Genomic Order:  1054
Name:  ? Glyma.20G105400 Secondary Identifier:  ? PAC:30520277
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G105400 0.5kb upstream 0.5kb upstream 12787 true Chr20: 34795801-34808587 Glycine max
Glyma.20G105400 0.5kb upstream 0.5kb upstream 500 false Chr20: 34795801-34796300 Glycine max
Glyma.20G105400 0.5kb downstream 0.5kb downstream 12787 true Chr20: 34796301-34809087 Glycine max
Glyma.20G105400 0.5kb downstream 0.5kb downstream 500 false Chr20: 34808588-34809087 Glycine max
Glyma.20G105400 1.0kb upstream 1.0kb upstream 13287 true Chr20: 34795301-34808587 Glycine max
Glyma.20G105400 1.0kb upstream 1.0kb upstream 1000 false Chr20: 34795301-34796300 Glycine max
Glyma.20G105400 1.0kb downstream 1.0kb downstream 13287 true Chr20: 34796301-34809587 Glycine max
Glyma.20G105400 1.0kb downstream 1.0kb downstream 1000 false Chr20: 34808588-34809587 Glycine max
Glyma.20G105400 2.0kb upstream 2.0kb upstream 14287 true Chr20: 34794301-34808587 Glycine max
Glyma.20G105400 2.0kb upstream 2.0kb upstream 2000 false Chr20: 34794301-34796300 Glycine max
Glyma.20G105400 2.0kb downstream 2.0kb downstream 14287 true Chr20: 34796301-34810587 Glycine max
Glyma.20G105400 2.0kb downstream 2.0kb downstream 2000 false Chr20: 34808588-34810587 Glycine max
Glyma.20G105400 5.0kb upstream 5.0kb upstream 17287 true Chr20: 34791301-34808587 Glycine max
Glyma.20G105400 5.0kb upstream 5.0kb upstream 5000 false Chr20: 34791301-34796300 Glycine max
Glyma.20G105400 5.0kb downstream 5.0kb downstream 17287 true Chr20: 34796301-34813587 Glycine max
Glyma.20G105400 5.0kb downstream 5.0kb downstream 5000 false Chr20: 34808588-34813587 Glycine max
Glyma.20G105400 10.0kb upstream 10.0kb upstream 22287 true Chr20: 34786301-34808587 Glycine max
Glyma.20G105400 10.0kb upstream 10.0kb upstream 10000 false Chr20: 34786301-34796300 Glycine max
Glyma.20G105400 10.0kb downstream 10.0kb downstream 22287 true Chr20: 34796301-34818587 Glycine max
Glyma.20G105400 10.0kb downstream 10.0kb downstream 10000 false Chr20: 34808588-34818587 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300423 5265 Fabidae View MSA
124068168 5270 Rosid View MSA
123745809 5271 Pentapetalae View MSA
122795005 5272 Eudicot View MSA
122045304 5273 Angiosperm View MSA
121348130 5274 Embryophyte View MSA
123428857 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.48043 0.0 14.6434    
cufflinks 4.70676 0.0 12.6299    
cufflinks 17.888 0.0 50.3648   High
cufflinks 4.22797 0.0 11.3909    
cufflinks 3.92902 0.0 10.6124    
cufflinks 1.83739 0.0 5.30545   Low
cufflinks 15.1903 0.0 42.1181   High
cufflinks 7.43386 0.0 19.85    
cufflinks 2.55753 0.0 7.12539   Low
cufflinks 3.474        
cufflinks 2.147        
cufflinks 6.823       High
cufflinks 1.946        
cufflinks 1.927        
cufflinks 1.338       Low
cufflinks 3.684        
cufflinks 2.137        
cufflinks 3.587        
cufflinks 2.949        
cufflinks 4.504       High
cufflinks 1.653       Low
cufflinks 3.246        
cufflinks 2.349        
cufflinks 2.266        
cufflinks 4.323       High
cufflinks 1.311       Low

0 Strain