Gene : Glyma.20G142500 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR15921:SF4 - PCF11P-SIMILAR PROTEIN 4 Genomic Order:  1425
Name:  ? Glyma.20G142500 Secondary Identifier:  ? PAC:30522852
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G142500 0.5kb upstream 0.5kb upstream 7253 true Chr20: 38104557-38111809 Glycine max
Glyma.20G142500 0.5kb upstream 0.5kb upstream 500 false Chr20: 38111310-38111809 Glycine max
Glyma.20G142500 0.5kb downstream 0.5kb downstream 7253 true Chr20: 38104057-38111309 Glycine max
Glyma.20G142500 0.5kb downstream 0.5kb downstream 500 false Chr20: 38104057-38104556 Glycine max
Glyma.20G142500 1.0kb upstream 1.0kb upstream 7753 true Chr20: 38104557-38112309 Glycine max
Glyma.20G142500 1.0kb upstream 1.0kb upstream 1000 false Chr20: 38111310-38112309 Glycine max
Glyma.20G142500 1.0kb downstream 1.0kb downstream 7753 true Chr20: 38103557-38111309 Glycine max
Glyma.20G142500 1.0kb downstream 1.0kb downstream 1000 false Chr20: 38103557-38104556 Glycine max
Glyma.20G142500 2.0kb upstream 2.0kb upstream 8753 true Chr20: 38104557-38113309 Glycine max
Glyma.20G142500 2.0kb upstream 2.0kb upstream 2000 false Chr20: 38111310-38113309 Glycine max
Glyma.20G142500 2.0kb downstream 2.0kb downstream 8753 true Chr20: 38102557-38111309 Glycine max
Glyma.20G142500 2.0kb downstream 2.0kb downstream 2000 false Chr20: 38102557-38104556 Glycine max
Glyma.20G142500 5.0kb upstream 5.0kb upstream 11753 true Chr20: 38104557-38116309 Glycine max
Glyma.20G142500 5.0kb upstream 5.0kb upstream 5000 false Chr20: 38111310-38116309 Glycine max
Glyma.20G142500 5.0kb downstream 5.0kb downstream 11753 true Chr20: 38099557-38111309 Glycine max
Glyma.20G142500 5.0kb downstream 5.0kb downstream 5000 false Chr20: 38099557-38104556 Glycine max
Glyma.20G142500 10.0kb upstream 10.0kb upstream 16753 true Chr20: 38104557-38121309 Glycine max
Glyma.20G142500 10.0kb upstream 10.0kb upstream 10000 false Chr20: 38111310-38121309 Glycine max
Glyma.20G142500 10.0kb downstream 10.0kb downstream 16753 true Chr20: 38094557-38111309 Glycine max
Glyma.20G142500 10.0kb downstream 10.0kb downstream 10000 false Chr20: 38094557-38104556 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307813 5265 Fabidae View MSA
124072237 5270 Rosid View MSA
123741427 5271 Pentapetalae View MSA
122796233 5272 Eudicot View MSA
122048698 5273 Angiosperm View MSA
121349751 5274 Embryophyte View MSA
123426332 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.38571 0.0 16.0433    
cufflinks 4.6228 0.0 16.6404    
cufflinks 4.08886 0.0 15.092    
cufflinks 5.09311 0.0 18.2728   High
cufflinks 4.74158 0.0 17.1083    
cufflinks 3.07936 0.0 10.3395   Low
cufflinks 4.41005 0.0 16.2269    
cufflinks 3.34202 0.0 11.071   Low
cufflinks 4.66404 0.0 14.561    
cufflinks 0.806       Low
cufflinks 0.781       Low
cufflinks 1.698       High
cufflinks 1.045        
cufflinks 1.239        
cufflinks 0.712       Low
cufflinks 1.272        
cufflinks 0.86        
cufflinks 1.695       High
cufflinks 1.464        
cufflinks 1.36        
cufflinks 0.758       Low
cufflinks 1.394        
cufflinks 1.4        
cufflinks 0.826        
cufflinks 1.332        
cufflinks 0.872        

0 Strain