Gene : Glyma.20G144600 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR11771:SF53 - LINOLEATE 9S-LIPOXYGENASE 5, CHLOROPLASTIC Genomic Order:  1446
Name:  ? Glyma.20G144600 Secondary Identifier:  ? PAC:30523139
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5406 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G144600 0.5kb upstream 0.5kb upstream 8585 true Chr20: 38316238-38324822 Glycine max
Glyma.20G144600 0.5kb upstream 0.5kb upstream 500 false Chr20: 38316238-38316737 Glycine max
Glyma.20G144600 0.5kb downstream 0.5kb downstream 8585 true Chr20: 38316738-38325322 Glycine max
Glyma.20G144600 0.5kb downstream 0.5kb downstream 500 false Chr20: 38324823-38325322 Glycine max
Glyma.20G144600 1.0kb upstream 1.0kb upstream 9085 true Chr20: 38315738-38324822 Glycine max
Glyma.20G144600 1.0kb upstream 1.0kb upstream 1000 false Chr20: 38315738-38316737 Glycine max
Glyma.20G144600 1.0kb downstream 1.0kb downstream 9085 true Chr20: 38316738-38325822 Glycine max
Glyma.20G144600 1.0kb downstream 1.0kb downstream 1000 false Chr20: 38324823-38325822 Glycine max
Glyma.20G144600 2.0kb upstream 2.0kb upstream 10085 true Chr20: 38314738-38324822 Glycine max
Glyma.20G144600 2.0kb upstream 2.0kb upstream 2000 false Chr20: 38314738-38316737 Glycine max
Glyma.20G144600 2.0kb downstream 2.0kb downstream 10085 true Chr20: 38316738-38326822 Glycine max
Glyma.20G144600 2.0kb downstream 2.0kb downstream 2000 false Chr20: 38324823-38326822 Glycine max
Glyma.20G144600 5.0kb upstream 5.0kb upstream 13085 true Chr20: 38311738-38324822 Glycine max
Glyma.20G144600 5.0kb upstream 5.0kb upstream 5000 false Chr20: 38311738-38316737 Glycine max
Glyma.20G144600 5.0kb downstream 5.0kb downstream 13085 true Chr20: 38316738-38329822 Glycine max
Glyma.20G144600 5.0kb downstream 5.0kb downstream 5000 false Chr20: 38324823-38329822 Glycine max
Glyma.20G144600 10.0kb upstream 10.0kb upstream 18085 true Chr20: 38306738-38324822 Glycine max
Glyma.20G144600 10.0kb upstream 10.0kb upstream 10000 false Chr20: 38306738-38316737 Glycine max
Glyma.20G144600 10.0kb downstream 10.0kb downstream 18085 true Chr20: 38316738-38334822 Glycine max
Glyma.20G144600 10.0kb downstream 10.0kb downstream 10000 false Chr20: 38324823-38334822 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122793975 5272 Eudicot View MSA
122302185 5265 Fabidae View MSA
124071703 5270 Rosid View MSA
123743828 5271 Pentapetalae View MSA
122049504 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.45876 0.0 28.1639    
cufflinks 0.170399 0.0 1.18234 Low Low
cufflinks 7.1008 0.0 26.5363    
cufflinks 33.5311 0.0 131.74 High High
cufflinks 9.58754 0.0 35.894    
cufflinks 2.16607 0.0 8.20998    
cufflinks 0.54849 0.0 2.4136   Low
cufflinks 2.32519 0.0 9.89806    
cufflinks 19.22 0.0 74.1229    
cufflinks 0.241        
cufflinks 0.956        
cufflinks 0.941        
cufflinks 0.825        
cufflinks 0.082       Low
cufflinks 1.74       High
cufflinks 0.087     Low Low
cufflinks 3.085       High
cufflinks 0.732        
cufflinks 0.234        
cufflinks 0.485        
cufflinks 1.447        
cufflinks 0.465        
cufflinks 0.559        
cufflinks 1.129        
cufflinks 0.198       Low
cufflinks 1.845       High

0 Strain