Gene : Glyma.20G145900 G. max Wm82.a2.v1
Defline:  (1 of 1) KOG3143 - Imidazoleglycerol-phosphate dehydratase Genomic Order:  1459
Name:  ? Glyma.20G145900 Secondary Identifier:  ? PAC:30520049
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax HISTSYN-PWY Glycine max pathologic  

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G145900 0.5kb upstream 0.5kb upstream 4133 true Chr20: 38437405-38441537 Glycine max
Glyma.20G145900 0.5kb upstream 0.5kb upstream 500 false Chr20: 38437405-38437904 Glycine max
Glyma.20G145900 0.5kb downstream 0.5kb downstream 4133 true Chr20: 38437905-38442037 Glycine max
Glyma.20G145900 0.5kb downstream 0.5kb downstream 500 false Chr20: 38441538-38442037 Glycine max
Glyma.20G145900 1.0kb upstream 1.0kb upstream 4633 true Chr20: 38436905-38441537 Glycine max
Glyma.20G145900 1.0kb upstream 1.0kb upstream 1000 false Chr20: 38436905-38437904 Glycine max
Glyma.20G145900 1.0kb downstream 1.0kb downstream 4633 true Chr20: 38437905-38442537 Glycine max
Glyma.20G145900 1.0kb downstream 1.0kb downstream 1000 false Chr20: 38441538-38442537 Glycine max
Glyma.20G145900 2.0kb upstream 2.0kb upstream 5633 true Chr20: 38435905-38441537 Glycine max
Glyma.20G145900 2.0kb upstream 2.0kb upstream 2000 false Chr20: 38435905-38437904 Glycine max
Glyma.20G145900 2.0kb downstream 2.0kb downstream 5633 true Chr20: 38437905-38443537 Glycine max
Glyma.20G145900 2.0kb downstream 2.0kb downstream 2000 false Chr20: 38441538-38443537 Glycine max
Glyma.20G145900 5.0kb upstream 5.0kb upstream 8633 true Chr20: 38432905-38441537 Glycine max
Glyma.20G145900 5.0kb upstream 5.0kb upstream 5000 false Chr20: 38432905-38437904 Glycine max
Glyma.20G145900 5.0kb downstream 5.0kb downstream 8633 true Chr20: 38437905-38446537 Glycine max
Glyma.20G145900 5.0kb downstream 5.0kb downstream 5000 false Chr20: 38441538-38446537 Glycine max
Glyma.20G145900 10.0kb upstream 10.0kb upstream 13633 true Chr20: 38427905-38441537 Glycine max
Glyma.20G145900 10.0kb upstream 10.0kb upstream 10000 false Chr20: 38427905-38437904 Glycine max
Glyma.20G145900 10.0kb downstream 10.0kb downstream 13633 true Chr20: 38437905-38451537 Glycine max
Glyma.20G145900 10.0kb downstream 10.0kb downstream 10000 false Chr20: 38441538-38451537 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307930 5265 Fabidae View MSA
124067658 5270 Rosid View MSA
123737408 5271 Pentapetalae View MSA
122786767 5272 Eudicot View MSA
122045110 5273 Angiosperm View MSA
121344413 5274 Embryophyte View MSA
123423926 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 36.333 0.0 97.1073 High High
cufflinks 27.6288 0.0 73.7363 High  
cufflinks 16.4374 0.0 44.6236   Low
cufflinks 26.8851 0.0 71.7599 High  
cufflinks 28.8709 0.0 77.0267 High  
cufflinks 26.1872 0.0 69.9316 High  
cufflinks 24.8041 0.0 66.2703 High  
cufflinks 28.4804 0.0 75.9859 High  
cufflinks 25.0862 0.0 67.0184 High  
cufflinks 7.659     High  
cufflinks 3.433       Low
cufflinks 6.244        
cufflinks 8.928     High High
cufflinks 9.254     High High
cufflinks 3.199       Low
cufflinks 7.029        
cufflinks 3.162       Low
cufflinks 7.357     High  
cufflinks 8.626     High High
cufflinks 6.82        
cufflinks 3.779       Low
cufflinks 7.681     High  
cufflinks 7.092        
cufflinks 4.153        
cufflinks 6.559        
cufflinks 4.437        

0 Strain