Gene : Glyma.20G148100 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR10314//PTHR10314:SF101 - SER/THR DEHYDRATASE, TRP SYNTHASE Genomic Order:  1481
Name:  ? Glyma.20G148100 Secondary Identifier:  ? PAC:30520865
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax CYSTSYN-PWY Glycine max pathologic  
Gmax PWY-6936 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G148100 0.5kb upstream 0.5kb upstream 5441 true Chr20: 38646899-38652339 Glycine max
Glyma.20G148100 0.5kb upstream 0.5kb upstream 500 false Chr20: 38651840-38652339 Glycine max
Glyma.20G148100 0.5kb downstream 0.5kb downstream 5441 true Chr20: 38646399-38651839 Glycine max
Glyma.20G148100 0.5kb downstream 0.5kb downstream 500 false Chr20: 38646399-38646898 Glycine max
Glyma.20G148100 1.0kb upstream 1.0kb upstream 5941 true Chr20: 38646899-38652839 Glycine max
Glyma.20G148100 1.0kb upstream 1.0kb upstream 1000 false Chr20: 38651840-38652839 Glycine max
Glyma.20G148100 1.0kb downstream 1.0kb downstream 5941 true Chr20: 38645899-38651839 Glycine max
Glyma.20G148100 1.0kb downstream 1.0kb downstream 1000 false Chr20: 38645899-38646898 Glycine max
Glyma.20G148100 2.0kb upstream 2.0kb upstream 6941 true Chr20: 38646899-38653839 Glycine max
Glyma.20G148100 2.0kb upstream 2.0kb upstream 2000 false Chr20: 38651840-38653839 Glycine max
Glyma.20G148100 2.0kb downstream 2.0kb downstream 6941 true Chr20: 38644899-38651839 Glycine max
Glyma.20G148100 2.0kb downstream 2.0kb downstream 2000 false Chr20: 38644899-38646898 Glycine max
Glyma.20G148100 5.0kb upstream 5.0kb upstream 9941 true Chr20: 38646899-38656839 Glycine max
Glyma.20G148100 5.0kb upstream 5.0kb upstream 5000 false Chr20: 38651840-38656839 Glycine max
Glyma.20G148100 5.0kb downstream 5.0kb downstream 9941 true Chr20: 38641899-38651839 Glycine max
Glyma.20G148100 5.0kb downstream 5.0kb downstream 5000 false Chr20: 38641899-38646898 Glycine max
Glyma.20G148100 10.0kb upstream 10.0kb upstream 14941 true Chr20: 38646899-38661839 Glycine max
Glyma.20G148100 10.0kb upstream 10.0kb upstream 10000 false Chr20: 38651840-38661839 Glycine max
Glyma.20G148100 10.0kb downstream 10.0kb downstream 14941 true Chr20: 38636899-38651839 Glycine max
Glyma.20G148100 10.0kb downstream 10.0kb downstream 10000 false Chr20: 38636899-38646898 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312558 5265 Fabidae View MSA
124073485 5270 Rosid View MSA
123750353 5271 Pentapetalae View MSA
122787082 5272 Eudicot View MSA
122044204 5273 Angiosperm View MSA
121350970 5274 Embryophyte View MSA
123424805 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.38593 0.0 7.87879    
cufflinks 0.0630661 0.0 0.262 Low Low
cufflinks 1.05987 0.0 9.56189    
cufflinks 0.23619 0.0 1.66534    
cufflinks 0.475322 0.0 2.37505    
cufflinks 10.5982 0.0 51.2724   High
cufflinks 3.55157 0.0 21.0847   High
cufflinks 0.0471805 0.0 0.198384 Low Low
cufflinks 0.408142 0.0 2.04036    
cufflinks 0.001     Low Low
cufflinks 0.254       High
cufflinks 0.045     Low  
cufflinks 0.047     Low  
cufflinks 0.113       High
cufflinks 0.007     Low  
cufflinks 0.002     Low Low
cufflinks 0.071        
cufflinks 0.054     Low  
cufflinks 0.006     Low  
cufflinks 0.003     Low  
cufflinks 0.04     Low  
cufflinks 0.002     Low Low
cufflinks 0.002     Low Low
cufflinks 0.151       High
cufflinks 0.003     Low  
cufflinks 0.127       High

0 Strain