Gene : Glyma.20G132700 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31807:SF4 - PROTEIN SNOWY COTYLEDON 3-RELATED Genomic Order:  1327
Name:  ? Glyma.20G132700 Secondary Identifier:  ? PAC:30522841
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G132700 0.5kb upstream 0.5kb upstream 5990 true Chr20: 37287664-37293653 Glycine max
Glyma.20G132700 0.5kb upstream 0.5kb upstream 500 false Chr20: 37287664-37288163 Glycine max
Glyma.20G132700 0.5kb downstream 0.5kb downstream 5990 true Chr20: 37288164-37294153 Glycine max
Glyma.20G132700 0.5kb downstream 0.5kb downstream 500 false Chr20: 37293654-37294153 Glycine max
Glyma.20G132700 1.0kb upstream 1.0kb upstream 6490 true Chr20: 37287164-37293653 Glycine max
Glyma.20G132700 1.0kb upstream 1.0kb upstream 1000 false Chr20: 37287164-37288163 Glycine max
Glyma.20G132700 1.0kb downstream 1.0kb downstream 6490 true Chr20: 37288164-37294653 Glycine max
Glyma.20G132700 1.0kb downstream 1.0kb downstream 1000 false Chr20: 37293654-37294653 Glycine max
Glyma.20G132700 2.0kb upstream 2.0kb upstream 7490 true Chr20: 37286164-37293653 Glycine max
Glyma.20G132700 2.0kb upstream 2.0kb upstream 2000 false Chr20: 37286164-37288163 Glycine max
Glyma.20G132700 2.0kb downstream 2.0kb downstream 7490 true Chr20: 37288164-37295653 Glycine max
Glyma.20G132700 2.0kb downstream 2.0kb downstream 2000 false Chr20: 37293654-37295653 Glycine max
Glyma.20G132700 5.0kb upstream 5.0kb upstream 10490 true Chr20: 37283164-37293653 Glycine max
Glyma.20G132700 5.0kb upstream 5.0kb upstream 5000 false Chr20: 37283164-37288163 Glycine max
Glyma.20G132700 5.0kb downstream 5.0kb downstream 10490 true Chr20: 37288164-37298653 Glycine max
Glyma.20G132700 5.0kb downstream 5.0kb downstream 5000 false Chr20: 37293654-37298653 Glycine max
Glyma.20G132700 10.0kb upstream 10.0kb upstream 15490 true Chr20: 37278164-37293653 Glycine max
Glyma.20G132700 10.0kb upstream 10.0kb upstream 10000 false Chr20: 37278164-37288163 Glycine max
Glyma.20G132700 10.0kb downstream 10.0kb downstream 15490 true Chr20: 37288164-37303653 Glycine max
Glyma.20G132700 10.0kb downstream 10.0kb downstream 10000 false Chr20: 37293654-37303653 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300701 5265 Fabidae View MSA
124065184 5270 Rosid View MSA
123747124 5271 Pentapetalae View MSA
122796341 5272 Eudicot View MSA
122044458 5273 Angiosperm View MSA
121348675 5274 Embryophyte View MSA
123426167 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.34216 0.0 4.31442   Low
cufflinks 5.59443 0.0 15.2153   High
cufflinks 1.14085 0.0 3.75665   Low
cufflinks 8.2199 0.0 21.9862   High
cufflinks 2.53554 0.0 7.44011    
cufflinks 2.27135 0.0 6.76825    
cufflinks 3.40844 0.0 9.64965    
cufflinks 3.92392 0.0 10.9642    
cufflinks 2.8025 0.0 8.13069    
cufflinks 2.047        
cufflinks 0.324       Low
cufflinks 1.214        
cufflinks 1.325        
cufflinks 1.653        
cufflinks 0.858        
cufflinks 3.252        
cufflinks 0.304       Low
cufflinks 2.044        
cufflinks 4.235       High
cufflinks 3.278       High
cufflinks 0.554        
cufflinks 3.226        
cufflinks 2.528        
cufflinks 0.355       Low
cufflinks 3.213        
cufflinks 0.498       Low

0 Strain