Gene : Glyma.20G133800 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR22765:SF54 - VACUOLAR-SORTING RECEPTOR 3-RELATED Genomic Order:  1338
Name:  ? Glyma.20G133800 Secondary Identifier:  ? PAC:30522979
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G133800 0.5kb upstream 0.5kb upstream 6128 true Chr20: 37377056-37383183 Glycine max
Glyma.20G133800 0.5kb upstream 0.5kb upstream 500 false Chr20: 37382684-37383183 Glycine max
Glyma.20G133800 0.5kb downstream 0.5kb downstream 6128 true Chr20: 37376556-37382683 Glycine max
Glyma.20G133800 0.5kb downstream 0.5kb downstream 500 false Chr20: 37376556-37377055 Glycine max
Glyma.20G133800 1.0kb upstream 1.0kb upstream 6628 true Chr20: 37377056-37383683 Glycine max
Glyma.20G133800 1.0kb upstream 1.0kb upstream 1000 false Chr20: 37382684-37383683 Glycine max
Glyma.20G133800 1.0kb downstream 1.0kb downstream 6628 true Chr20: 37376056-37382683 Glycine max
Glyma.20G133800 1.0kb downstream 1.0kb downstream 1000 false Chr20: 37376056-37377055 Glycine max
Glyma.20G133800 2.0kb upstream 2.0kb upstream 7628 true Chr20: 37377056-37384683 Glycine max
Glyma.20G133800 2.0kb upstream 2.0kb upstream 2000 false Chr20: 37382684-37384683 Glycine max
Glyma.20G133800 2.0kb downstream 2.0kb downstream 7628 true Chr20: 37375056-37382683 Glycine max
Glyma.20G133800 2.0kb downstream 2.0kb downstream 2000 false Chr20: 37375056-37377055 Glycine max
Glyma.20G133800 5.0kb upstream 5.0kb upstream 10628 true Chr20: 37377056-37387683 Glycine max
Glyma.20G133800 5.0kb upstream 5.0kb upstream 5000 false Chr20: 37382684-37387683 Glycine max
Glyma.20G133800 5.0kb downstream 5.0kb downstream 10628 true Chr20: 37372056-37382683 Glycine max
Glyma.20G133800 5.0kb downstream 5.0kb downstream 5000 false Chr20: 37372056-37377055 Glycine max
Glyma.20G133800 10.0kb upstream 10.0kb upstream 15628 true Chr20: 37377056-37392683 Glycine max
Glyma.20G133800 10.0kb upstream 10.0kb upstream 10000 false Chr20: 37382684-37392683 Glycine max
Glyma.20G133800 10.0kb downstream 10.0kb downstream 15628 true Chr20: 37367056-37382683 Glycine max
Glyma.20G133800 10.0kb downstream 10.0kb downstream 10000 false Chr20: 37367056-37377055 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300582 5265 Fabidae View MSA
124068352 5270 Rosid View MSA
123747014 5271 Pentapetalae View MSA
122793065 5272 Eudicot View MSA
122047431 5273 Angiosperm View MSA
121350422 5274 Embryophyte View MSA
123428728 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.2181 0.0 60.7114 High Low
cufflinks 30.5608 0.0 85.8527 High  
cufflinks 43.9019 0.0 129.769 High  
cufflinks 44.8993 0.0 132.838 High  
cufflinks 37.1226 0.0 106.841 High  
cufflinks 35.272 0.0 101.051 High  
cufflinks 59.8699 0.0 185.239 High High
cufflinks 29.6217 0.0 82.9672 High  
cufflinks 39.9366 0.0 116.04 High  
cufflinks 12.867     High Low
cufflinks 31.074     High High
cufflinks 24.309     High High
cufflinks 17.882     High  
cufflinks 17.712     High  
cufflinks 29.293     High High
cufflinks 14.561     High  
cufflinks 15.556     High  
cufflinks 20.301     High  
cufflinks 18.166     High  
cufflinks 14.132     High  
cufflinks 20.22     High  
cufflinks 13.192     High Low
cufflinks 14.881     High  
cufflinks 22.24     High  
cufflinks 14.38     High  
cufflinks 19.755     High  

0 Strain