Gene : Glyma.20G125900 G. max Wm82.a2.v1
Defline:  (1 of 52) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  1259
Name:  ? Glyma.20G125900 Secondary Identifier:  ? PAC:30522345
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Ontology Annotation Displayer

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Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G125900 0.5kb upstream 0.5kb upstream 3085 true Chr20: 36801343-36804427 Glycine max
Glyma.20G125900 0.5kb upstream 0.5kb upstream 500 false Chr20: 36801343-36801842 Glycine max
Glyma.20G125900 0.5kb downstream 0.5kb downstream 3085 true Chr20: 36801843-36804927 Glycine max
Glyma.20G125900 0.5kb downstream 0.5kb downstream 500 false Chr20: 36804428-36804927 Glycine max
Glyma.20G125900 1.0kb upstream 1.0kb upstream 3585 true Chr20: 36800843-36804427 Glycine max
Glyma.20G125900 1.0kb upstream 1.0kb upstream 1000 false Chr20: 36800843-36801842 Glycine max
Glyma.20G125900 1.0kb downstream 1.0kb downstream 3585 true Chr20: 36801843-36805427 Glycine max
Glyma.20G125900 1.0kb downstream 1.0kb downstream 1000 false Chr20: 36804428-36805427 Glycine max
Glyma.20G125900 2.0kb upstream 2.0kb upstream 4585 true Chr20: 36799843-36804427 Glycine max
Glyma.20G125900 2.0kb upstream 2.0kb upstream 2000 false Chr20: 36799843-36801842 Glycine max
Glyma.20G125900 2.0kb downstream 2.0kb downstream 4585 true Chr20: 36801843-36806427 Glycine max
Glyma.20G125900 2.0kb downstream 2.0kb downstream 2000 false Chr20: 36804428-36806427 Glycine max
Glyma.20G125900 5.0kb upstream 5.0kb upstream 7585 true Chr20: 36796843-36804427 Glycine max
Glyma.20G125900 5.0kb upstream 5.0kb upstream 5000 false Chr20: 36796843-36801842 Glycine max
Glyma.20G125900 5.0kb downstream 5.0kb downstream 7585 true Chr20: 36801843-36809427 Glycine max
Glyma.20G125900 5.0kb downstream 5.0kb downstream 5000 false Chr20: 36804428-36809427 Glycine max
Glyma.20G125900 10.0kb upstream 10.0kb upstream 12585 true Chr20: 36791843-36804427 Glycine max
Glyma.20G125900 10.0kb upstream 10.0kb upstream 10000 false Chr20: 36791843-36801842 Glycine max
Glyma.20G125900 10.0kb downstream 10.0kb downstream 12585 true Chr20: 36801843-36814427 Glycine max
Glyma.20G125900 10.0kb downstream 10.0kb downstream 10000 false Chr20: 36804428-36814427 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300887 5265 Fabidae View MSA
124063313 5270 Rosid View MSA
123738652 5271 Pentapetalae View MSA
122793005 5272 Eudicot View MSA
122045173 5273 Angiosperm View MSA
121310410 5274 Embryophyte View MSA
123347900 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.60795 0.0 10.3736   High
cufflinks 1.96024 0.0 6.11529    
cufflinks 0.909749 0.0 3.1297    
cufflinks 1.19934 0.0 4.00609    
cufflinks 1.08156 0.0 3.65646    
cufflinks 0.55327 0.0 1.98454   Low
cufflinks 1.51682 0.0 4.91549    
cufflinks 0.967903 0.0 3.31287    
cufflinks 1.14573 0.0 3.84165    
cufflinks 0.755        
cufflinks 0.532       Low
cufflinks 2.041       High
cufflinks 1.082        
cufflinks 1.23        
cufflinks 0.4       Low
cufflinks 1.598        
cufflinks 0.847        
cufflinks 1.96        
cufflinks 2.156       High
cufflinks 1.668        
cufflinks 0.364       Low
cufflinks 1.629        
cufflinks 2.268       High
cufflinks 0.401       Low
cufflinks 1.659        
cufflinks 0.483       Low

0 Strain