Gene : Glyma.20G167800 G. max Wm82.a2.v1
Defline:  (1 of 1) 2.7.8.27 - Sphingomyelin synthase / SM synthase Genomic Order:  1678
Name:  ? Glyma.20G167800 Secondary Identifier:  ? PAC:30522717
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY3DJ-11281 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G167800 0.5kb upstream 0.5kb upstream 3617 true Chr20: 40563725-40567341 Glycine max
Glyma.20G167800 0.5kb upstream 0.5kb upstream 500 false Chr20: 40566842-40567341 Glycine max
Glyma.20G167800 0.5kb downstream 0.5kb downstream 3617 true Chr20: 40563225-40566841 Glycine max
Glyma.20G167800 0.5kb downstream 0.5kb downstream 500 false Chr20: 40563225-40563724 Glycine max
Glyma.20G167800 1.0kb upstream 1.0kb upstream 4117 true Chr20: 40563725-40567841 Glycine max
Glyma.20G167800 1.0kb upstream 1.0kb upstream 1000 false Chr20: 40566842-40567841 Glycine max
Glyma.20G167800 1.0kb downstream 1.0kb downstream 4117 true Chr20: 40562725-40566841 Glycine max
Glyma.20G167800 1.0kb downstream 1.0kb downstream 1000 false Chr20: 40562725-40563724 Glycine max
Glyma.20G167800 2.0kb upstream 2.0kb upstream 5117 true Chr20: 40563725-40568841 Glycine max
Glyma.20G167800 2.0kb upstream 2.0kb upstream 2000 false Chr20: 40566842-40568841 Glycine max
Glyma.20G167800 2.0kb downstream 2.0kb downstream 5117 true Chr20: 40561725-40566841 Glycine max
Glyma.20G167800 2.0kb downstream 2.0kb downstream 2000 false Chr20: 40561725-40563724 Glycine max
Glyma.20G167800 5.0kb upstream 5.0kb upstream 8117 true Chr20: 40563725-40571841 Glycine max
Glyma.20G167800 5.0kb upstream 5.0kb upstream 5000 false Chr20: 40566842-40571841 Glycine max
Glyma.20G167800 5.0kb downstream 5.0kb downstream 8117 true Chr20: 40558725-40566841 Glycine max
Glyma.20G167800 5.0kb downstream 5.0kb downstream 5000 false Chr20: 40558725-40563724 Glycine max
Glyma.20G167800 10.0kb upstream 10.0kb upstream 13117 true Chr20: 40563725-40576841 Glycine max
Glyma.20G167800 10.0kb upstream 10.0kb upstream 10000 false Chr20: 40566842-40576841 Glycine max
Glyma.20G167800 10.0kb downstream 10.0kb downstream 13117 true Chr20: 40553725-40566841 Glycine max
Glyma.20G167800 10.0kb downstream 10.0kb downstream 10000 false Chr20: 40553725-40563724 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041514 5273 Angiosperm View MSA
122305234 5265 Fabidae View MSA
124064312 5270 Rosid View MSA
123737084 5271 Pentapetalae View MSA
122786755 5272 Eudicot View MSA
121345949 5274 Embryophyte View MSA
123427335 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.214 0.0 15.084    
cufflinks 11.1065 0.0 30.0523    
cufflinks 3.04839 0.0 9.51996   Low
cufflinks 16.4192 0.0 43.8472   High
cufflinks 14.6818 0.0 39.2566    
cufflinks 4.7164 0.0 13.7891   Low
cufflinks 12.4495 0.0 33.4758    
cufflinks 12.3028 0.0 33.1126    
cufflinks 7.74075 0.0 21.4351    
cufflinks 7.057       High
cufflinks 0.534       Low
cufflinks 2.75        
cufflinks 7.747     High High
cufflinks 10.974     High High
cufflinks 0.811       Low
cufflinks 3.916        
cufflinks 1.69        
cufflinks 4.768        
cufflinks 6.482        
cufflinks 3.494        
cufflinks 1.374        
cufflinks 3.742        
cufflinks 3.519        
cufflinks 0.737       Low
cufflinks 3.655        
cufflinks 2.135        

0 Strain