Gene : Glyma.20G161400 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR12606:SF15 - NEDD8-SPECIFIC PROTEASE 1 Genomic Order:  1614
Name:  ? Glyma.20G161400 Secondary Identifier:  ? PAC:30520297
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G161400 0.5kb upstream 0.5kb upstream 3692 true Chr20: 39932210-39935901 Glycine max
Glyma.20G161400 0.5kb upstream 0.5kb upstream 500 false Chr20: 39935402-39935901 Glycine max
Glyma.20G161400 0.5kb downstream 0.5kb downstream 3692 true Chr20: 39931710-39935401 Glycine max
Glyma.20G161400 0.5kb downstream 0.5kb downstream 500 false Chr20: 39931710-39932209 Glycine max
Glyma.20G161400 1.0kb upstream 1.0kb upstream 4192 true Chr20: 39932210-39936401 Glycine max
Glyma.20G161400 1.0kb upstream 1.0kb upstream 1000 false Chr20: 39935402-39936401 Glycine max
Glyma.20G161400 1.0kb downstream 1.0kb downstream 4192 true Chr20: 39931210-39935401 Glycine max
Glyma.20G161400 1.0kb downstream 1.0kb downstream 1000 false Chr20: 39931210-39932209 Glycine max
Glyma.20G161400 2.0kb upstream 2.0kb upstream 5192 true Chr20: 39932210-39937401 Glycine max
Glyma.20G161400 2.0kb upstream 2.0kb upstream 2000 false Chr20: 39935402-39937401 Glycine max
Glyma.20G161400 2.0kb downstream 2.0kb downstream 5192 true Chr20: 39930210-39935401 Glycine max
Glyma.20G161400 2.0kb downstream 2.0kb downstream 2000 false Chr20: 39930210-39932209 Glycine max
Glyma.20G161400 5.0kb upstream 5.0kb upstream 8192 true Chr20: 39932210-39940401 Glycine max
Glyma.20G161400 5.0kb upstream 5.0kb upstream 5000 false Chr20: 39935402-39940401 Glycine max
Glyma.20G161400 5.0kb downstream 5.0kb downstream 8192 true Chr20: 39927210-39935401 Glycine max
Glyma.20G161400 5.0kb downstream 5.0kb downstream 5000 false Chr20: 39927210-39932209 Glycine max
Glyma.20G161400 10.0kb upstream 10.0kb upstream 13192 true Chr20: 39932210-39945401 Glycine max
Glyma.20G161400 10.0kb upstream 10.0kb upstream 10000 false Chr20: 39935402-39945401 Glycine max
Glyma.20G161400 10.0kb downstream 10.0kb downstream 13192 true Chr20: 39922210-39935401 Glycine max
Glyma.20G161400 10.0kb downstream 10.0kb downstream 10000 false Chr20: 39922210-39932209 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121779369 5273 Angiosperm View MSA
122254875 5265 Fabidae View MSA
123996843 5270 Rosid View MSA
123742431 5271 Pentapetalae View MSA
122770289 5272 Eudicot View MSA
123429184 5275 Viridiplantae View MSA
121051035 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.71886 0.0 12.2316   High
cufflinks 1.0007 0.0 7.94595    
cufflinks 0.809045 0.0 7.74288    
cufflinks 0.576019 0.0 5.46986   Low
cufflinks 0.844192 0.0 5.14561    
cufflinks 1.44542 0.0 10.9053    
cufflinks 0.667332 0.0 5.1307   Low
cufflinks 1.28331 0.0 8.64201    
cufflinks 1.23777 0.0 8.2654    
cufflinks 0.081     Low  
cufflinks 0.069        
cufflinks 0.155        
cufflinks 0.19        
cufflinks 0.162        
cufflinks 0.02     Low Low
cufflinks 0.142        
cufflinks 0.077        
cufflinks 0.342       High
cufflinks 0.161        
cufflinks 0.12        
cufflinks 0.063        
cufflinks 0.135        
cufflinks 0.15        
cufflinks 0.1        
cufflinks 0.127        
cufflinks 0.063     Low  

0 Strain