Gene : Glyma.20G161600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR11831:SF1 - U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3 Genomic Order:  1616
Name:  ? Glyma.20G161600 Secondary Identifier:  ? PAC:30522907
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G161600 0.5kb upstream 0.5kb upstream 3496 true Chr20: 39946956-39950451 Glycine max
Glyma.20G161600 0.5kb upstream 0.5kb upstream 500 false Chr20: 39946956-39947455 Glycine max
Glyma.20G161600 0.5kb downstream 0.5kb downstream 3496 true Chr20: 39947456-39950951 Glycine max
Glyma.20G161600 0.5kb downstream 0.5kb downstream 500 false Chr20: 39950452-39950951 Glycine max
Glyma.20G161600 1.0kb upstream 1.0kb upstream 3996 true Chr20: 39946456-39950451 Glycine max
Glyma.20G161600 1.0kb upstream 1.0kb upstream 1000 false Chr20: 39946456-39947455 Glycine max
Glyma.20G161600 1.0kb downstream 1.0kb downstream 3996 true Chr20: 39947456-39951451 Glycine max
Glyma.20G161600 1.0kb downstream 1.0kb downstream 1000 false Chr20: 39950452-39951451 Glycine max
Glyma.20G161600 2.0kb upstream 2.0kb upstream 4996 true Chr20: 39945456-39950451 Glycine max
Glyma.20G161600 2.0kb upstream 2.0kb upstream 2000 false Chr20: 39945456-39947455 Glycine max
Glyma.20G161600 2.0kb downstream 2.0kb downstream 4996 true Chr20: 39947456-39952451 Glycine max
Glyma.20G161600 2.0kb downstream 2.0kb downstream 2000 false Chr20: 39950452-39952451 Glycine max
Glyma.20G161600 5.0kb upstream 5.0kb upstream 7996 true Chr20: 39942456-39950451 Glycine max
Glyma.20G161600 5.0kb upstream 5.0kb upstream 5000 false Chr20: 39942456-39947455 Glycine max
Glyma.20G161600 5.0kb downstream 5.0kb downstream 7996 true Chr20: 39947456-39955451 Glycine max
Glyma.20G161600 5.0kb downstream 5.0kb downstream 5000 false Chr20: 39950452-39955451 Glycine max
Glyma.20G161600 10.0kb upstream 10.0kb upstream 12996 true Chr20: 39937456-39950451 Glycine max
Glyma.20G161600 10.0kb upstream 10.0kb upstream 10000 false Chr20: 39937456-39947455 Glycine max
Glyma.20G161600 10.0kb downstream 10.0kb downstream 12996 true Chr20: 39947456-39960451 Glycine max
Glyma.20G161600 10.0kb downstream 10.0kb downstream 10000 false Chr20: 39950452-39960451 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308325 5265 Fabidae View MSA
124067940 5270 Rosid View MSA
123740372 5271 Pentapetalae View MSA
122792450 5272 Eudicot View MSA
122044096 5273 Angiosperm View MSA
121345167 5274 Embryophyte View MSA
123424004 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.236 0.0 33.476    
cufflinks 17.7871 0.0 47.7015    
cufflinks 11.0978 0.0 30.4798    
cufflinks 17.2639 0.0 46.3092    
cufflinks 12.9972 0.0 35.4133    
cufflinks 8.5362 0.0 24.0743   Low
cufflinks 43.2904 0.0 117.366 High High
cufflinks 12.6708 0.0 34.574    
cufflinks 15.7923 0.0 42.549    
cufflinks 3.268       Low
cufflinks 3.353       Low
cufflinks 6.853       High
cufflinks 5.901        
cufflinks 8.025     High High
cufflinks 4.654        
cufflinks 5.384        
cufflinks 3.715        
cufflinks 6.913       High
cufflinks 7.216       High
cufflinks 4.683        
cufflinks 3.505       Low
cufflinks 5.027        
cufflinks 5.528        
cufflinks 3.782        
cufflinks 5.079        
cufflinks 3.495       Low

0 Strain