Gene : Glyma.20G161800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13107 - KARYOGAMY PROTEIN KAR4-RELATED Genomic Order:  1618
Name:  ? Glyma.20G161800 Secondary Identifier:  ? PAC:30521858
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G161800 0.5kb upstream 0.5kb upstream 7260 true Chr20: 39955683-39962942 Glycine max
Glyma.20G161800 0.5kb upstream 0.5kb upstream 500 false Chr20: 39962443-39962942 Glycine max
Glyma.20G161800 0.5kb downstream 0.5kb downstream 7260 true Chr20: 39955183-39962442 Glycine max
Glyma.20G161800 0.5kb downstream 0.5kb downstream 500 false Chr20: 39955183-39955682 Glycine max
Glyma.20G161800 1.0kb upstream 1.0kb upstream 7760 true Chr20: 39955683-39963442 Glycine max
Glyma.20G161800 1.0kb upstream 1.0kb upstream 1000 false Chr20: 39962443-39963442 Glycine max
Glyma.20G161800 1.0kb downstream 1.0kb downstream 7760 true Chr20: 39954683-39962442 Glycine max
Glyma.20G161800 1.0kb downstream 1.0kb downstream 1000 false Chr20: 39954683-39955682 Glycine max
Glyma.20G161800 2.0kb upstream 2.0kb upstream 8760 true Chr20: 39955683-39964442 Glycine max
Glyma.20G161800 2.0kb upstream 2.0kb upstream 2000 false Chr20: 39962443-39964442 Glycine max
Glyma.20G161800 2.0kb downstream 2.0kb downstream 8760 true Chr20: 39953683-39962442 Glycine max
Glyma.20G161800 2.0kb downstream 2.0kb downstream 2000 false Chr20: 39953683-39955682 Glycine max
Glyma.20G161800 5.0kb upstream 5.0kb upstream 11760 true Chr20: 39955683-39967442 Glycine max
Glyma.20G161800 5.0kb upstream 5.0kb upstream 5000 false Chr20: 39962443-39967442 Glycine max
Glyma.20G161800 5.0kb downstream 5.0kb downstream 11760 true Chr20: 39950683-39962442 Glycine max
Glyma.20G161800 5.0kb downstream 5.0kb downstream 5000 false Chr20: 39950683-39955682 Glycine max
Glyma.20G161800 10.0kb upstream 10.0kb upstream 16760 true Chr20: 39955683-39972442 Glycine max
Glyma.20G161800 10.0kb upstream 10.0kb upstream 10000 false Chr20: 39962443-39972442 Glycine max
Glyma.20G161800 10.0kb downstream 10.0kb downstream 16760 true Chr20: 39945683-39962442 Glycine max
Glyma.20G161800 10.0kb downstream 10.0kb downstream 10000 false Chr20: 39945683-39955682 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301130 5265 Fabidae View MSA
124068937 5270 Rosid View MSA
123737308 5271 Pentapetalae View MSA
122789765 5272 Eudicot View MSA
122041791 5273 Angiosperm View MSA
121349708 5274 Embryophyte View MSA
123428450 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.3769 0.0 53.3034    
cufflinks 11.0522 0.0 38.6113    
cufflinks 10.0469 0.0 35.5407    
cufflinks 14.4217 0.0 52.9132    
cufflinks 13.2743 0.0 48.5164    
cufflinks 5.77691 0.0 20.4186   Low
cufflinks 28.3513 0.0 125.088 High High
cufflinks 8.9632 0.0 31.3128    
cufflinks 13.9371 0.0 50.9189    
cufflinks 2.182       Low
cufflinks 2.189       Low
cufflinks 4.677        
cufflinks 2.944        
cufflinks 3.77        
cufflinks 3.632        
cufflinks 5.989        
cufflinks 1.937       Low
cufflinks 5.036        
cufflinks 3.628        
cufflinks 8.41     High High
cufflinks 2.712        
cufflinks 7.982     High High
cufflinks 3.784        
cufflinks 2.638        
cufflinks 7.008     High High
cufflinks 2.865        

0 Strain