Gene : Glyma.20G162100 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31636:SF4 - SCARECROW-LIKE PROTEIN 8 Genomic Order:  1621
Name:  ? Glyma.20G162100 Secondary Identifier:  ? PAC:30520352
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G162100 0.5kb upstream 0.5kb upstream 2798 true Chr20: 39982564-39985361 Glycine max
Glyma.20G162100 0.5kb upstream 0.5kb upstream 500 false Chr20: 39984862-39985361 Glycine max
Glyma.20G162100 0.5kb downstream 0.5kb downstream 2798 true Chr20: 39982064-39984861 Glycine max
Glyma.20G162100 0.5kb downstream 0.5kb downstream 500 false Chr20: 39982064-39982563 Glycine max
Glyma.20G162100 1.0kb upstream 1.0kb upstream 3298 true Chr20: 39982564-39985861 Glycine max
Glyma.20G162100 1.0kb upstream 1.0kb upstream 1000 false Chr20: 39984862-39985861 Glycine max
Glyma.20G162100 1.0kb downstream 1.0kb downstream 3298 true Chr20: 39981564-39984861 Glycine max
Glyma.20G162100 1.0kb downstream 1.0kb downstream 1000 false Chr20: 39981564-39982563 Glycine max
Glyma.20G162100 2.0kb upstream 2.0kb upstream 4298 true Chr20: 39982564-39986861 Glycine max
Glyma.20G162100 2.0kb upstream 2.0kb upstream 2000 false Chr20: 39984862-39986861 Glycine max
Glyma.20G162100 2.0kb downstream 2.0kb downstream 4298 true Chr20: 39980564-39984861 Glycine max
Glyma.20G162100 2.0kb downstream 2.0kb downstream 2000 false Chr20: 39980564-39982563 Glycine max
Glyma.20G162100 5.0kb upstream 5.0kb upstream 7298 true Chr20: 39982564-39989861 Glycine max
Glyma.20G162100 5.0kb upstream 5.0kb upstream 5000 false Chr20: 39984862-39989861 Glycine max
Glyma.20G162100 5.0kb downstream 5.0kb downstream 7298 true Chr20: 39977564-39984861 Glycine max
Glyma.20G162100 5.0kb downstream 5.0kb downstream 5000 false Chr20: 39977564-39982563 Glycine max
Glyma.20G162100 10.0kb upstream 10.0kb upstream 12298 true Chr20: 39982564-39994861 Glycine max
Glyma.20G162100 10.0kb upstream 10.0kb upstream 10000 false Chr20: 39984862-39994861 Glycine max
Glyma.20G162100 10.0kb downstream 10.0kb downstream 12298 true Chr20: 39972564-39984861 Glycine max
Glyma.20G162100 10.0kb downstream 10.0kb downstream 10000 false Chr20: 39972564-39982563 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122253858 5265 Fabidae View MSA
124062619 5270 Rosid View MSA
123752771 5271 Pentapetalae View MSA
122794202 5272 Eudicot View MSA
122051595 5273 Angiosperm View MSA
121350442 5274 Embryophyte View MSA
123381734 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.09286 0.0 11.7214    
cufflinks 1.71144 0.0 5.55684   Low
cufflinks 6.54641 0.0 18.0908   High
cufflinks 3.76821 0.0 10.958    
cufflinks 4.0728 0.0 11.5889    
cufflinks 4.53264 0.0 12.8286    
cufflinks 2.27704 0.0 7.0269   Low
cufflinks 2.4924 0.0 7.66905    
cufflinks 4.49744 0.0 12.7525    
cufflinks 1.14        
cufflinks 9.083     High High
cufflinks 4.032        
cufflinks 2.699        
cufflinks 1.039        
cufflinks 1.232        
cufflinks 1.751        
cufflinks 13.768     High High
cufflinks 1.554        
cufflinks 1.24        
cufflinks 1.131        
cufflinks 3.798        
cufflinks 1.395        
cufflinks 0.936       Low
cufflinks 12.153     High High
cufflinks 0.988        
cufflinks 6.124       High

0 Strain