Gene : Glyma.20G155000 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11946:SF5 - VALYL-TRNA SYNTHETASE, ISOFORM A Genomic Order:  1550
Name:  ? Glyma.20G155000 Secondary Identifier:  ? PAC:30521374
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

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Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G155000 0.5kb upstream 0.5kb upstream 3081 true Chr20: 39383933-39387013 Glycine max
Glyma.20G155000 0.5kb upstream 0.5kb upstream 500 false Chr20: 39383933-39384432 Glycine max
Glyma.20G155000 0.5kb downstream 0.5kb downstream 3081 true Chr20: 39384433-39387513 Glycine max
Glyma.20G155000 0.5kb downstream 0.5kb downstream 500 false Chr20: 39387014-39387513 Glycine max
Glyma.20G155000 1.0kb upstream 1.0kb upstream 3581 true Chr20: 39383433-39387013 Glycine max
Glyma.20G155000 1.0kb upstream 1.0kb upstream 1000 false Chr20: 39383433-39384432 Glycine max
Glyma.20G155000 1.0kb downstream 1.0kb downstream 3581 true Chr20: 39384433-39388013 Glycine max
Glyma.20G155000 1.0kb downstream 1.0kb downstream 1000 false Chr20: 39387014-39388013 Glycine max
Glyma.20G155000 2.0kb upstream 2.0kb upstream 4581 true Chr20: 39382433-39387013 Glycine max
Glyma.20G155000 2.0kb upstream 2.0kb upstream 2000 false Chr20: 39382433-39384432 Glycine max
Glyma.20G155000 2.0kb downstream 2.0kb downstream 4581 true Chr20: 39384433-39389013 Glycine max
Glyma.20G155000 2.0kb downstream 2.0kb downstream 2000 false Chr20: 39387014-39389013 Glycine max
Glyma.20G155000 5.0kb upstream 5.0kb upstream 7581 true Chr20: 39379433-39387013 Glycine max
Glyma.20G155000 5.0kb upstream 5.0kb upstream 5000 false Chr20: 39379433-39384432 Glycine max
Glyma.20G155000 5.0kb downstream 5.0kb downstream 7581 true Chr20: 39384433-39392013 Glycine max
Glyma.20G155000 5.0kb downstream 5.0kb downstream 5000 false Chr20: 39387014-39392013 Glycine max
Glyma.20G155000 10.0kb upstream 10.0kb upstream 12581 true Chr20: 39374433-39387013 Glycine max
Glyma.20G155000 10.0kb upstream 10.0kb upstream 10000 false Chr20: 39374433-39384432 Glycine max
Glyma.20G155000 10.0kb downstream 10.0kb downstream 12581 true Chr20: 39384433-39397013 Glycine max
Glyma.20G155000 10.0kb downstream 10.0kb downstream 10000 false Chr20: 39387014-39397013 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122238137 5265 Fabidae Singleton cluster - no MSA
124039952 5270 Rosid View MSA
123752070 5271 Pentapetalae View MSA
122788218 5272 Eudicot View MSA
122045228 5273 Angiosperm View MSA
121348805 5274 Embryophyte View MSA
123424302 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.11538E-4 0.0 0.00317288 Low Low
cufflinks 4.52465E-4 0.0 0.00659321 Low  
cufflinks 0.0267785 0.0 0.118415 Low  
cufflinks 0.0120457 0.0 0.0578047 Low  
cufflinks 0.0190803 0.0 0.0875442 Low  
cufflinks 8.61566E-5 0.0 0.0027589 Low Low
cufflinks 3.3614E-4 0.0 0.00566295 Low  
cufflinks 0.0221476 0.0 0.100146 Low  
cufflinks 0.022313 0.0 0.100836 Low  
cufflinks 0.685        
cufflinks 0.547        
cufflinks 0.578        
cufflinks 1.303       High
cufflinks 1.54       High
cufflinks 0.448        
cufflinks 0.663        
cufflinks 0.396       Low
cufflinks 0.594        
cufflinks 0.712        
cufflinks 0.553        
cufflinks 0.517        
cufflinks 0.513        
cufflinks 0.459        
cufflinks 0.602        
cufflinks 0.646        
cufflinks 0.434        

0 Strain