Gene : Glyma.20G149400 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR11830 - 40S RIBOSOMAL PROTEIN S3A Genomic Order:  1494
Name:  ? Glyma.20G149400 Secondary Identifier:  ? PAC:30521965
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G149400 0.5kb upstream 0.5kb upstream 3142 true Chr20: 38800290-38803431 Glycine max
Glyma.20G149400 0.5kb upstream 0.5kb upstream 500 false Chr20: 38802932-38803431 Glycine max
Glyma.20G149400 0.5kb downstream 0.5kb downstream 3142 true Chr20: 38799790-38802931 Glycine max
Glyma.20G149400 0.5kb downstream 0.5kb downstream 500 false Chr20: 38799790-38800289 Glycine max
Glyma.20G149400 1.0kb upstream 1.0kb upstream 3642 true Chr20: 38800290-38803931 Glycine max
Glyma.20G149400 1.0kb upstream 1.0kb upstream 1000 false Chr20: 38802932-38803931 Glycine max
Glyma.20G149400 1.0kb downstream 1.0kb downstream 3642 true Chr20: 38799290-38802931 Glycine max
Glyma.20G149400 1.0kb downstream 1.0kb downstream 1000 false Chr20: 38799290-38800289 Glycine max
Glyma.20G149400 2.0kb upstream 2.0kb upstream 4642 true Chr20: 38800290-38804931 Glycine max
Glyma.20G149400 2.0kb upstream 2.0kb upstream 2000 false Chr20: 38802932-38804931 Glycine max
Glyma.20G149400 2.0kb downstream 2.0kb downstream 4642 true Chr20: 38798290-38802931 Glycine max
Glyma.20G149400 2.0kb downstream 2.0kb downstream 2000 false Chr20: 38798290-38800289 Glycine max
Glyma.20G149400 5.0kb upstream 5.0kb upstream 7642 true Chr20: 38800290-38807931 Glycine max
Glyma.20G149400 5.0kb upstream 5.0kb upstream 5000 false Chr20: 38802932-38807931 Glycine max
Glyma.20G149400 5.0kb downstream 5.0kb downstream 7642 true Chr20: 38795290-38802931 Glycine max
Glyma.20G149400 5.0kb downstream 5.0kb downstream 5000 false Chr20: 38795290-38800289 Glycine max
Glyma.20G149400 10.0kb upstream 10.0kb upstream 12642 true Chr20: 38800290-38812931 Glycine max
Glyma.20G149400 10.0kb upstream 10.0kb upstream 10000 false Chr20: 38802932-38812931 Glycine max
Glyma.20G149400 10.0kb downstream 10.0kb downstream 12642 true Chr20: 38790290-38802931 Glycine max
Glyma.20G149400 10.0kb downstream 10.0kb downstream 10000 false Chr20: 38790290-38800289 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307732 5265 Fabidae View MSA
124066895 5270 Rosid View MSA
123743383 5271 Pentapetalae View MSA
122787922 5272 Eudicot View MSA
122049456 5273 Angiosperm View MSA
121347467 5274 Embryophyte View MSA
123424177 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 173.415 0.0 883.81 High  
cufflinks 182.764 0.0 980.14 High  
cufflinks 78.8964 0.0 341.249 High Low
cufflinks 126.66 0.0 581.934 High  
cufflinks 283.98 0.0 1899.43 High High
cufflinks 180.373 0.0 944.394 High  
cufflinks 278.39 0.0 1894.58 High High
cufflinks 135.743 0.0 626.901 High  
cufflinks 205.389 0.0 1135.27 High  
cufflinks 24.381     High  
cufflinks 7.241     High Low
cufflinks 23.481     High  
cufflinks 65.537     High High
cufflinks 98.743     High High
cufflinks 8.916     High Low
cufflinks 22.763     High  
cufflinks 13.248     High  
cufflinks 22.964     High  
cufflinks 33.578     High  
cufflinks 17.834     High  
cufflinks 12.433     High  
cufflinks 18.583     High  
cufflinks 26.869     High  
cufflinks 8.975     High Low
cufflinks 23.018     High  
cufflinks 17.401     High  

0 Strain