Gene : Glyma.20G149800 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31351:SF4 - GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MWI23-RELATED Genomic Order:  1498
Name:  ? Glyma.20G149800 Secondary Identifier:  ? PAC:30522984
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G149800 0.5kb upstream 0.5kb upstream 4161 true Chr20: 38862580-38866740 Glycine max
Glyma.20G149800 0.5kb upstream 0.5kb upstream 500 false Chr20: 38862580-38863079 Glycine max
Glyma.20G149800 0.5kb downstream 0.5kb downstream 4161 true Chr20: 38863080-38867240 Glycine max
Glyma.20G149800 0.5kb downstream 0.5kb downstream 500 false Chr20: 38866741-38867240 Glycine max
Glyma.20G149800 1.0kb upstream 1.0kb upstream 4661 true Chr20: 38862080-38866740 Glycine max
Glyma.20G149800 1.0kb upstream 1.0kb upstream 1000 false Chr20: 38862080-38863079 Glycine max
Glyma.20G149800 1.0kb downstream 1.0kb downstream 4661 true Chr20: 38863080-38867740 Glycine max
Glyma.20G149800 1.0kb downstream 1.0kb downstream 1000 false Chr20: 38866741-38867740 Glycine max
Glyma.20G149800 2.0kb upstream 2.0kb upstream 5661 true Chr20: 38861080-38866740 Glycine max
Glyma.20G149800 2.0kb upstream 2.0kb upstream 2000 false Chr20: 38861080-38863079 Glycine max
Glyma.20G149800 2.0kb downstream 2.0kb downstream 5661 true Chr20: 38863080-38868740 Glycine max
Glyma.20G149800 2.0kb downstream 2.0kb downstream 2000 false Chr20: 38866741-38868740 Glycine max
Glyma.20G149800 5.0kb upstream 5.0kb upstream 8661 true Chr20: 38858080-38866740 Glycine max
Glyma.20G149800 5.0kb upstream 5.0kb upstream 5000 false Chr20: 38858080-38863079 Glycine max
Glyma.20G149800 5.0kb downstream 5.0kb downstream 8661 true Chr20: 38863080-38871740 Glycine max
Glyma.20G149800 5.0kb downstream 5.0kb downstream 5000 false Chr20: 38866741-38871740 Glycine max
Glyma.20G149800 10.0kb upstream 10.0kb upstream 13661 true Chr20: 38853080-38866740 Glycine max
Glyma.20G149800 10.0kb upstream 10.0kb upstream 10000 false Chr20: 38853080-38863079 Glycine max
Glyma.20G149800 10.0kb downstream 10.0kb downstream 13661 true Chr20: 38863080-38876740 Glycine max
Glyma.20G149800 10.0kb downstream 10.0kb downstream 10000 false Chr20: 38866741-38876740 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311433 5265 Fabidae View MSA
124060539 5270 Rosid View MSA
123746535 5271 Pentapetalae View MSA
122785782 5272 Eudicot View MSA
122047623 5273 Angiosperm View MSA
121348921 5274 Embryophyte View MSA
123381080 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.59344 0.0 12.705    
cufflinks 1.91547 0.0 8.3431    
cufflinks 4.73801 0.0 18.606    
cufflinks 5.49013 0.0 23.4442   High
cufflinks 1.28016 0.0 6.38118    
cufflinks 0.287281 0.0 1.39711 Low Low
cufflinks 2.72208 0.0 8.20705    
cufflinks 4.12479 0.0 14.44    
cufflinks 1.1057 0.0 5.69652    
cufflinks 2.425       High
cufflinks 0.179        
cufflinks 1.249        
cufflinks 0.132        
cufflinks 0.11       Low
cufflinks 0.05     Low Low
cufflinks 2.208       High
cufflinks 0.111       Low
cufflinks 1.56        
cufflinks 0.505        
cufflinks 1.986        
cufflinks 0.222        
cufflinks 2.204       High
cufflinks 1.587        
cufflinks 0.124        
cufflinks 2.521       High
cufflinks 0.158        

0 Strain