Gene : Glyma.20G185500 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR12565//PTHR12565:SF139 - STEROL REGULATORY ELEMENT-BINDING PROTEIN Genomic Order:  1855
Name:  ? Glyma.20G185500 Secondary Identifier:  ? PAC:30523439
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G185500 0.5kb upstream 0.5kb upstream 4090 true Chr20: 42402803-42406892 Glycine max
Glyma.20G185500 0.5kb upstream 0.5kb upstream 500 false Chr20: 42402803-42403302 Glycine max
Glyma.20G185500 0.5kb downstream 0.5kb downstream 4090 true Chr20: 42403303-42407392 Glycine max
Glyma.20G185500 0.5kb downstream 0.5kb downstream 500 false Chr20: 42406893-42407392 Glycine max
Glyma.20G185500 1.0kb upstream 1.0kb upstream 4590 true Chr20: 42402303-42406892 Glycine max
Glyma.20G185500 1.0kb upstream 1.0kb upstream 1000 false Chr20: 42402303-42403302 Glycine max
Glyma.20G185500 1.0kb downstream 1.0kb downstream 4590 true Chr20: 42403303-42407892 Glycine max
Glyma.20G185500 1.0kb downstream 1.0kb downstream 1000 false Chr20: 42406893-42407892 Glycine max
Glyma.20G185500 2.0kb upstream 2.0kb upstream 5590 true Chr20: 42401303-42406892 Glycine max
Glyma.20G185500 2.0kb upstream 2.0kb upstream 2000 false Chr20: 42401303-42403302 Glycine max
Glyma.20G185500 2.0kb downstream 2.0kb downstream 5590 true Chr20: 42403303-42408892 Glycine max
Glyma.20G185500 2.0kb downstream 2.0kb downstream 2000 false Chr20: 42406893-42408892 Glycine max
Glyma.20G185500 5.0kb upstream 5.0kb upstream 8590 true Chr20: 42398303-42406892 Glycine max
Glyma.20G185500 5.0kb upstream 5.0kb upstream 5000 false Chr20: 42398303-42403302 Glycine max
Glyma.20G185500 5.0kb downstream 5.0kb downstream 8590 true Chr20: 42403303-42411892 Glycine max
Glyma.20G185500 5.0kb downstream 5.0kb downstream 5000 false Chr20: 42406893-42411892 Glycine max
Glyma.20G185500 10.0kb upstream 10.0kb upstream 13590 true Chr20: 42393303-42406892 Glycine max
Glyma.20G185500 10.0kb upstream 10.0kb upstream 10000 false Chr20: 42393303-42403302 Glycine max
Glyma.20G185500 10.0kb downstream 10.0kb downstream 13590 true Chr20: 42403303-42416892 Glycine max
Glyma.20G185500 10.0kb downstream 10.0kb downstream 10000 false Chr20: 42406893-42416892 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311698 5265 Fabidae View MSA
124065415 5270 Rosid View MSA
123749080 5271 Pentapetalae View MSA
122789211 5272 Eudicot View MSA
122048947 5273 Angiosperm View MSA
121351451 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.862452 0.0 5.2159   Low
cufflinks 6.29122 0.0 28.8704   High
cufflinks 0.729324 0.0 4.46966   Low
cufflinks 1.04182 0.0 7.11555    
cufflinks 5.17357 0.0 22.1336    
cufflinks 1.8112 0.0 8.65373    
cufflinks 2.16772 0.0 11.1779    
cufflinks 8.33027 0.0 32.0645   High
cufflinks 4.08918 0.0 18.5911    
cufflinks 1.478       High
cufflinks 0.046     Low Low
cufflinks 0.261        
cufflinks 1.005        
cufflinks 0.872        
cufflinks 0.008     Low Low
cufflinks 0.741        
cufflinks 0.157        
cufflinks 0.3        
cufflinks 0.789        
cufflinks 0.451        
cufflinks 0.058     Low Low
cufflinks 0.741        
cufflinks 0.875        
cufflinks 0.097        
cufflinks 0.55        
cufflinks 0.113        

0 Strain