Gene : Glyma.20G179500 G. max Wm82.a2.v1
Defline:  (1 of 2) 4.2.3.5 - Chorismate synthase / 5-enolpyruvylshikimate-3-phosphate phospholyase Genomic Order:  1795
Name:  ? Glyma.20G179500 Secondary Identifier:  ? PAC:30522677
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax ARO-PWY Glycine max pathologic  
Gmax PWY-6163 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G179500 0.5kb upstream 0.5kb upstream 10689 true Chr20: 41694761-41705449 Glycine max
Glyma.20G179500 0.5kb upstream 0.5kb upstream 500 false Chr20: 41694761-41695260 Glycine max
Glyma.20G179500 0.5kb downstream 0.5kb downstream 10689 true Chr20: 41695261-41705949 Glycine max
Glyma.20G179500 0.5kb downstream 0.5kb downstream 500 false Chr20: 41705450-41705949 Glycine max
Glyma.20G179500 1.0kb upstream 1.0kb upstream 11189 true Chr20: 41694261-41705449 Glycine max
Glyma.20G179500 1.0kb upstream 1.0kb upstream 1000 false Chr20: 41694261-41695260 Glycine max
Glyma.20G179500 1.0kb downstream 1.0kb downstream 11189 true Chr20: 41695261-41706449 Glycine max
Glyma.20G179500 1.0kb downstream 1.0kb downstream 1000 false Chr20: 41705450-41706449 Glycine max
Glyma.20G179500 2.0kb upstream 2.0kb upstream 12189 true Chr20: 41693261-41705449 Glycine max
Glyma.20G179500 2.0kb upstream 2.0kb upstream 2000 false Chr20: 41693261-41695260 Glycine max
Glyma.20G179500 2.0kb downstream 2.0kb downstream 12189 true Chr20: 41695261-41707449 Glycine max
Glyma.20G179500 2.0kb downstream 2.0kb downstream 2000 false Chr20: 41705450-41707449 Glycine max
Glyma.20G179500 5.0kb upstream 5.0kb upstream 15189 true Chr20: 41690261-41705449 Glycine max
Glyma.20G179500 5.0kb upstream 5.0kb upstream 5000 false Chr20: 41690261-41695260 Glycine max
Glyma.20G179500 5.0kb downstream 5.0kb downstream 15189 true Chr20: 41695261-41710449 Glycine max
Glyma.20G179500 5.0kb downstream 5.0kb downstream 5000 false Chr20: 41705450-41710449 Glycine max
Glyma.20G179500 10.0kb upstream 10.0kb upstream 20189 true Chr20: 41685261-41705449 Glycine max
Glyma.20G179500 10.0kb upstream 10.0kb upstream 10000 false Chr20: 41685261-41695260 Glycine max
Glyma.20G179500 10.0kb downstream 10.0kb downstream 20189 true Chr20: 41695261-41715449 Glycine max
Glyma.20G179500 10.0kb downstream 10.0kb downstream 10000 false Chr20: 41705450-41715449 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041230 5273 Angiosperm View MSA
122305453 5265 Fabidae View MSA
124061876 5270 Rosid View MSA
123747909 5271 Pentapetalae View MSA
122787011 5272 Eudicot View MSA
121346403 5274 Embryophyte View MSA
123428194 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 68.1947 0.0 296.533 High High
cufflinks 37.4391 0.0 139.507 High Low
cufflinks 45.6291 0.0 177.77 High  
cufflinks 53.8921 0.0 217.939 High  
cufflinks 46.1702 0.0 179.224 High  
cufflinks 47.5558 0.0 185.903 High  
cufflinks 39.0059 0.0 145.844 High Low
cufflinks 67.3563 0.0 292.888 High High
cufflinks 42.9781 0.0 164.739 High  
cufflinks 5.064       High
cufflinks 2.117       Low
cufflinks 4.09        
cufflinks 4.682       High
cufflinks 3.947        
cufflinks 1.462       Low
cufflinks 3.124        
cufflinks 2.226       Low
cufflinks 4.816       High
cufflinks 3.293        
cufflinks 3.354        
cufflinks 2.51        
cufflinks 3.66        
cufflinks 3.656        
cufflinks 3.179        
cufflinks 3.023        
cufflinks 2.216       Low

0 Strain