Gene : Glyma.20G180400 G. max Wm82.a2.v1
Defline:  (1 of 40) PF00651//PF03000 - BTB/POZ domain (BTB) // NPH3 family (NPH3) Genomic Order:  1804
Name:  ? Glyma.20G180400 Secondary Identifier:  ? PAC:30522531
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G180400 0.5kb upstream 0.5kb upstream 4091 true Chr20: 41842670-41846760 Glycine max
Glyma.20G180400 0.5kb upstream 0.5kb upstream 500 false Chr20: 41842670-41843169 Glycine max
Glyma.20G180400 0.5kb downstream 0.5kb downstream 4091 true Chr20: 41843170-41847260 Glycine max
Glyma.20G180400 0.5kb downstream 0.5kb downstream 500 false Chr20: 41846761-41847260 Glycine max
Glyma.20G180400 1.0kb upstream 1.0kb upstream 4591 true Chr20: 41842170-41846760 Glycine max
Glyma.20G180400 1.0kb upstream 1.0kb upstream 1000 false Chr20: 41842170-41843169 Glycine max
Glyma.20G180400 1.0kb downstream 1.0kb downstream 4591 true Chr20: 41843170-41847760 Glycine max
Glyma.20G180400 1.0kb downstream 1.0kb downstream 1000 false Chr20: 41846761-41847760 Glycine max
Glyma.20G180400 2.0kb upstream 2.0kb upstream 5591 true Chr20: 41841170-41846760 Glycine max
Glyma.20G180400 2.0kb upstream 2.0kb upstream 2000 false Chr20: 41841170-41843169 Glycine max
Glyma.20G180400 2.0kb downstream 2.0kb downstream 5591 true Chr20: 41843170-41848760 Glycine max
Glyma.20G180400 2.0kb downstream 2.0kb downstream 2000 false Chr20: 41846761-41848760 Glycine max
Glyma.20G180400 5.0kb upstream 5.0kb upstream 8591 true Chr20: 41838170-41846760 Glycine max
Glyma.20G180400 5.0kb upstream 5.0kb upstream 5000 false Chr20: 41838170-41843169 Glycine max
Glyma.20G180400 5.0kb downstream 5.0kb downstream 8591 true Chr20: 41843170-41851760 Glycine max
Glyma.20G180400 5.0kb downstream 5.0kb downstream 5000 false Chr20: 41846761-41851760 Glycine max
Glyma.20G180400 10.0kb upstream 10.0kb upstream 13591 true Chr20: 41833170-41846760 Glycine max
Glyma.20G180400 10.0kb upstream 10.0kb upstream 10000 false Chr20: 41833170-41843169 Glycine max
Glyma.20G180400 10.0kb downstream 10.0kb downstream 13591 true Chr20: 41843170-41856760 Glycine max
Glyma.20G180400 10.0kb downstream 10.0kb downstream 10000 false Chr20: 41846761-41856760 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310183 5265 Fabidae View MSA
124071972 5270 Rosid View MSA
123743168 5271 Pentapetalae View MSA
122791271 5272 Eudicot View MSA
122050644 5273 Angiosperm View MSA
121312043 5274 Embryophyte View MSA
123349254 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.40648 0.0 1.49475   High
cufflinks 0.0394723 0.0 0.160019 Low  
cufflinks 0.0196235 0.0 0.0830814 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.255309 0.0 0.961776    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.372       High
cufflinks 0.005     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.011     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.656       High
cufflinks 0.105        
cufflinks 0.005     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.005     Low  
cufflinks 0.005     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain