Gene : Glyma.20G177400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13373:SF22 - GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT C, CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  1774
Name:  ? Glyma.20G177400 Secondary Identifier:  ? PAC:30521194
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G177400 0.5kb upstream 0.5kb upstream 2622 true Chr20: 41468079-41470700 Glycine max
Glyma.20G177400 0.5kb upstream 0.5kb upstream 500 false Chr20: 41470201-41470700 Glycine max
Glyma.20G177400 0.5kb downstream 0.5kb downstream 2622 true Chr20: 41467579-41470200 Glycine max
Glyma.20G177400 0.5kb downstream 0.5kb downstream 500 false Chr20: 41467579-41468078 Glycine max
Glyma.20G177400 1.0kb upstream 1.0kb upstream 3122 true Chr20: 41468079-41471200 Glycine max
Glyma.20G177400 1.0kb upstream 1.0kb upstream 1000 false Chr20: 41470201-41471200 Glycine max
Glyma.20G177400 1.0kb downstream 1.0kb downstream 3122 true Chr20: 41467079-41470200 Glycine max
Glyma.20G177400 1.0kb downstream 1.0kb downstream 1000 false Chr20: 41467079-41468078 Glycine max
Glyma.20G177400 2.0kb upstream 2.0kb upstream 4122 true Chr20: 41468079-41472200 Glycine max
Glyma.20G177400 2.0kb upstream 2.0kb upstream 2000 false Chr20: 41470201-41472200 Glycine max
Glyma.20G177400 2.0kb downstream 2.0kb downstream 4122 true Chr20: 41466079-41470200 Glycine max
Glyma.20G177400 2.0kb downstream 2.0kb downstream 2000 false Chr20: 41466079-41468078 Glycine max
Glyma.20G177400 5.0kb upstream 5.0kb upstream 7122 true Chr20: 41468079-41475200 Glycine max
Glyma.20G177400 5.0kb upstream 5.0kb upstream 5000 false Chr20: 41470201-41475200 Glycine max
Glyma.20G177400 5.0kb downstream 5.0kb downstream 7122 true Chr20: 41463079-41470200 Glycine max
Glyma.20G177400 5.0kb downstream 5.0kb downstream 5000 false Chr20: 41463079-41468078 Glycine max
Glyma.20G177400 10.0kb upstream 10.0kb upstream 12122 true Chr20: 41468079-41480200 Glycine max
Glyma.20G177400 10.0kb upstream 10.0kb upstream 10000 false Chr20: 41470201-41480200 Glycine max
Glyma.20G177400 10.0kb downstream 10.0kb downstream 12122 true Chr20: 41458079-41470200 Glycine max
Glyma.20G177400 10.0kb downstream 10.0kb downstream 10000 false Chr20: 41458079-41468078 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312033 5265 Fabidae View MSA
124065204 5270 Rosid View MSA
123741294 5271 Pentapetalae View MSA
122794718 5272 Eudicot View MSA
122044892 5273 Angiosperm View MSA
121344912 5274 Embryophyte View MSA
123380128 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.7349 0.0 74.5819   High
cufflinks 19.7231 0.0 77.7204    
cufflinks 8.68561 0.0 37.9115   Low
cufflinks 15.1214 0.0 54.6395    
cufflinks 15.4825 0.0 55.6968    
cufflinks 14.6424 0.0 53.1526    
cufflinks 24.8468 0.0 93.2353 High High
cufflinks 9.5473 0.0 39.707   Low
cufflinks 14.6299 0.0 53.0685    
cufflinks 0.948        
cufflinks 0.848        
cufflinks 1.139        
cufflinks 1.067        
cufflinks 1.509        
cufflinks 0.766       Low
cufflinks 3.11       High
cufflinks 0.774        
cufflinks 1.278        
cufflinks 1.496        
cufflinks 4.079       High
cufflinks 0.919        
cufflinks 3.239       High
cufflinks 3.496       High
cufflinks 0.931        
cufflinks 3.738       High
cufflinks 0.666       Low

0 Strain