Gene : Glyma.20G168900 G. max Wm82.a2.v1
Defline:  (1 of 2) KOG4442 - Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis Genomic Order:  1689
Name:  ? Glyma.20G168900 Secondary Identifier:  ? PAC:30522587
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G168900 0.5kb upstream 0.5kb upstream 7261 true Chr20: 40675575-40682835 Glycine max
Glyma.20G168900 0.5kb upstream 0.5kb upstream 500 false Chr20: 40675575-40676074 Glycine max
Glyma.20G168900 0.5kb downstream 0.5kb downstream 7261 true Chr20: 40676075-40683335 Glycine max
Glyma.20G168900 0.5kb downstream 0.5kb downstream 500 false Chr20: 40682836-40683335 Glycine max
Glyma.20G168900 1.0kb upstream 1.0kb upstream 7761 true Chr20: 40675075-40682835 Glycine max
Glyma.20G168900 1.0kb upstream 1.0kb upstream 1000 false Chr20: 40675075-40676074 Glycine max
Glyma.20G168900 1.0kb downstream 1.0kb downstream 7761 true Chr20: 40676075-40683835 Glycine max
Glyma.20G168900 1.0kb downstream 1.0kb downstream 1000 false Chr20: 40682836-40683835 Glycine max
Glyma.20G168900 2.0kb upstream 2.0kb upstream 8761 true Chr20: 40674075-40682835 Glycine max
Glyma.20G168900 2.0kb upstream 2.0kb upstream 2000 false Chr20: 40674075-40676074 Glycine max
Glyma.20G168900 2.0kb downstream 2.0kb downstream 8761 true Chr20: 40676075-40684835 Glycine max
Glyma.20G168900 2.0kb downstream 2.0kb downstream 2000 false Chr20: 40682836-40684835 Glycine max
Glyma.20G168900 5.0kb upstream 5.0kb upstream 11761 true Chr20: 40671075-40682835 Glycine max
Glyma.20G168900 5.0kb upstream 5.0kb upstream 5000 false Chr20: 40671075-40676074 Glycine max
Glyma.20G168900 5.0kb downstream 5.0kb downstream 11761 true Chr20: 40676075-40687835 Glycine max
Glyma.20G168900 5.0kb downstream 5.0kb downstream 5000 false Chr20: 40682836-40687835 Glycine max
Glyma.20G168900 10.0kb upstream 10.0kb upstream 16761 true Chr20: 40666075-40682835 Glycine max
Glyma.20G168900 10.0kb upstream 10.0kb upstream 10000 false Chr20: 40666075-40676074 Glycine max
Glyma.20G168900 10.0kb downstream 10.0kb downstream 16761 true Chr20: 40676075-40692835 Glycine max
Glyma.20G168900 10.0kb downstream 10.0kb downstream 10000 false Chr20: 40682836-40692835 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297403 5265 Fabidae View MSA
124065473 5270 Rosid View MSA
123751966 5271 Pentapetalae View MSA
122790455 5272 Eudicot View MSA
122049912 5273 Angiosperm View MSA
123428946 5275 Viridiplantae View MSA
121350319 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.78308 0.0 19.5037    
cufflinks 5.97799 0.0 17.4667    
cufflinks 8.57085 0.0 23.8718   High
cufflinks 6.96352 0.0 19.8905    
cufflinks 4.94752 0.0 14.8178   Low
cufflinks 5.79614 0.0 16.9887    
cufflinks 5.6171 0.0 16.5614    
cufflinks 5.87843 0.0 17.1832    
cufflinks 6.96954 0.0 19.9605    
cufflinks 1.562        
cufflinks 1.166       Low
cufflinks 2.172        
cufflinks 1.309        
cufflinks 1.487        
cufflinks 1.75        
cufflinks 2.536        
cufflinks 0.978       Low
cufflinks 2.518        
cufflinks 2.47        
cufflinks 2.848       High
cufflinks 1.241       Low
cufflinks 2.73       High
cufflinks 2.571        
cufflinks 1.485        
cufflinks 2.777       High
cufflinks 1.145       Low

0 Strain