Gene : Glyma.20G172200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23139:SF8 - CLEAVAGE STIMULATION FACTOR 64 KILODALTON SUBUNIT Genomic Order:  1722
Name:  ? Glyma.20G172200 Secondary Identifier:  ? PAC:30521260
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G172200 0.5kb upstream 0.5kb upstream 7985 true Chr20: 40991014-40998998 Glycine max
Glyma.20G172200 0.5kb upstream 0.5kb upstream 500 false Chr20: 40991014-40991513 Glycine max
Glyma.20G172200 0.5kb downstream 0.5kb downstream 7985 true Chr20: 40991514-40999498 Glycine max
Glyma.20G172200 0.5kb downstream 0.5kb downstream 500 false Chr20: 40998999-40999498 Glycine max
Glyma.20G172200 1.0kb upstream 1.0kb upstream 8485 true Chr20: 40990514-40998998 Glycine max
Glyma.20G172200 1.0kb upstream 1.0kb upstream 1000 false Chr20: 40990514-40991513 Glycine max
Glyma.20G172200 1.0kb downstream 1.0kb downstream 8485 true Chr20: 40991514-40999998 Glycine max
Glyma.20G172200 1.0kb downstream 1.0kb downstream 1000 false Chr20: 40998999-40999998 Glycine max
Glyma.20G172200 2.0kb upstream 2.0kb upstream 9485 true Chr20: 40989514-40998998 Glycine max
Glyma.20G172200 2.0kb upstream 2.0kb upstream 2000 false Chr20: 40989514-40991513 Glycine max
Glyma.20G172200 2.0kb downstream 2.0kb downstream 9485 true Chr20: 40991514-41000998 Glycine max
Glyma.20G172200 2.0kb downstream 2.0kb downstream 2000 false Chr20: 40998999-41000998 Glycine max
Glyma.20G172200 5.0kb upstream 5.0kb upstream 12485 true Chr20: 40986514-40998998 Glycine max
Glyma.20G172200 5.0kb upstream 5.0kb upstream 5000 false Chr20: 40986514-40991513 Glycine max
Glyma.20G172200 5.0kb downstream 5.0kb downstream 12485 true Chr20: 40991514-41003998 Glycine max
Glyma.20G172200 5.0kb downstream 5.0kb downstream 5000 false Chr20: 40998999-41003998 Glycine max
Glyma.20G172200 10.0kb upstream 10.0kb upstream 17485 true Chr20: 40981514-40998998 Glycine max
Glyma.20G172200 10.0kb upstream 10.0kb upstream 10000 false Chr20: 40981514-40991513 Glycine max
Glyma.20G172200 10.0kb downstream 10.0kb downstream 17485 true Chr20: 40991514-41008998 Glycine max
Glyma.20G172200 10.0kb downstream 10.0kb downstream 10000 false Chr20: 40998999-41008998 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041194 5273 Angiosperm View MSA
122302940 5265 Fabidae View MSA
124063438 5270 Rosid View MSA
123738960 5271 Pentapetalae View MSA
122787206 5272 Eudicot View MSA
123429142 5275 Viridiplantae View MSA
121344917 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.5274 0.0 40.4477   High
cufflinks 7.99213 0.0 29.1265    
cufflinks 8.88513 0.0 32.2416    
cufflinks 8.66694 0.0 31.4579    
cufflinks 11.1283 0.0 34.3285   High
cufflinks 9.57598 0.0 33.878    
cufflinks 6.27206 0.0 24.0572   Low
cufflinks 10.8676 0.0 38.3669    
cufflinks 9.16427 0.0 28.6571    
cufflinks 1.767        
cufflinks 1.725        
cufflinks 1.527        
cufflinks 2.051       High
cufflinks 2.385       High
cufflinks 1.508        
cufflinks 1.362        
cufflinks 1.522        
cufflinks 1.541        
cufflinks 1.401        
cufflinks 1.485        
cufflinks 1.908       High
cufflinks 1.388        
cufflinks 1.496        
cufflinks 1.855        
cufflinks 1.362        
cufflinks 1.347       Low

0 Strain