Gene : Glyma.20G198300 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR19306:SF1 - STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 Genomic Order:  1983
Name:  ? Glyma.20G198300 Secondary Identifier:  ? PAC:30520144
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G198300 0.5kb upstream 0.5kb upstream 19584 true Chr20: 43566968-43586551 Glycine max
Glyma.20G198300 0.5kb upstream 0.5kb upstream 500 false Chr20: 43566968-43567467 Glycine max
Glyma.20G198300 0.5kb downstream 0.5kb downstream 19584 true Chr20: 43567468-43587051 Glycine max
Glyma.20G198300 0.5kb downstream 0.5kb downstream 500 false Chr20: 43586552-43587051 Glycine max
Glyma.20G198300 1.0kb upstream 1.0kb upstream 20084 true Chr20: 43566468-43586551 Glycine max
Glyma.20G198300 1.0kb upstream 1.0kb upstream 1000 false Chr20: 43566468-43567467 Glycine max
Glyma.20G198300 1.0kb downstream 1.0kb downstream 20084 true Chr20: 43567468-43587551 Glycine max
Glyma.20G198300 1.0kb downstream 1.0kb downstream 1000 false Chr20: 43586552-43587551 Glycine max
Glyma.20G198300 2.0kb upstream 2.0kb upstream 21084 true Chr20: 43565468-43586551 Glycine max
Glyma.20G198300 2.0kb upstream 2.0kb upstream 2000 false Chr20: 43565468-43567467 Glycine max
Glyma.20G198300 2.0kb downstream 2.0kb downstream 21084 true Chr20: 43567468-43588551 Glycine max
Glyma.20G198300 2.0kb downstream 2.0kb downstream 2000 false Chr20: 43586552-43588551 Glycine max
Glyma.20G198300 5.0kb upstream 5.0kb upstream 24084 true Chr20: 43562468-43586551 Glycine max
Glyma.20G198300 5.0kb upstream 5.0kb upstream 5000 false Chr20: 43562468-43567467 Glycine max
Glyma.20G198300 5.0kb downstream 5.0kb downstream 24084 true Chr20: 43567468-43591551 Glycine max
Glyma.20G198300 5.0kb downstream 5.0kb downstream 5000 false Chr20: 43586552-43591551 Glycine max
Glyma.20G198300 10.0kb upstream 10.0kb upstream 29084 true Chr20: 43557468-43586551 Glycine max
Glyma.20G198300 10.0kb upstream 10.0kb upstream 10000 false Chr20: 43557468-43567467 Glycine max
Glyma.20G198300 10.0kb downstream 10.0kb downstream 29084 true Chr20: 43567468-43596551 Glycine max
Glyma.20G198300 10.0kb downstream 10.0kb downstream 10000 false Chr20: 43586552-43596551 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301924 5265 Fabidae View MSA
124065348 5270 Rosid View MSA
123736538 5271 Pentapetalae View MSA
122789208 5272 Eudicot View MSA
122042538 5273 Angiosperm View MSA
121345004 5274 Embryophyte View MSA
123424617 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.30265 0.0 6.58511   Low
cufflinks 6.59736 0.0 17.6121   High
cufflinks 4.97478 0.0 13.3637    
cufflinks 4.41211 0.0 11.9212    
cufflinks 3.0253 0.0 8.41151    
cufflinks 2.19216 0.0 6.29955   Low
cufflinks 4.1934 0.0 11.3916    
cufflinks 2.8322 0.0 7.90631    
cufflinks 3.72637 0.0 10.1785    
cufflinks 0.77        
cufflinks 0.631        
cufflinks 1.258       High
cufflinks 0.808        
cufflinks 0.79        
cufflinks 1.14        
cufflinks 0.877        
cufflinks 0.566       Low
cufflinks 1.224       High
cufflinks 1.968       High
cufflinks 0.612        
cufflinks 0.628        
cufflinks 0.798        
cufflinks 1.305       High
cufflinks 0.522       Low
cufflinks 0.685        
cufflinks 0.76        

0 Strain