Gene : Glyma.20G198500 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR11064:SF27 - NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED Genomic Order:  1985
Name:  ? Glyma.20G198500 Secondary Identifier:  ? PAC:30521101
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G198500 0.5kb upstream 0.5kb upstream 4685 true Chr20: 43607171-43611855 Glycine max
Glyma.20G198500 0.5kb upstream 0.5kb upstream 500 false Chr20: 43611356-43611855 Glycine max
Glyma.20G198500 0.5kb downstream 0.5kb downstream 4685 true Chr20: 43606671-43611355 Glycine max
Glyma.20G198500 0.5kb downstream 0.5kb downstream 500 false Chr20: 43606671-43607170 Glycine max
Glyma.20G198500 1.0kb upstream 1.0kb upstream 5185 true Chr20: 43607171-43612355 Glycine max
Glyma.20G198500 1.0kb upstream 1.0kb upstream 1000 false Chr20: 43611356-43612355 Glycine max
Glyma.20G198500 1.0kb downstream 1.0kb downstream 5185 true Chr20: 43606171-43611355 Glycine max
Glyma.20G198500 1.0kb downstream 1.0kb downstream 1000 false Chr20: 43606171-43607170 Glycine max
Glyma.20G198500 2.0kb upstream 2.0kb upstream 6185 true Chr20: 43607171-43613355 Glycine max
Glyma.20G198500 2.0kb upstream 2.0kb upstream 2000 false Chr20: 43611356-43613355 Glycine max
Glyma.20G198500 2.0kb downstream 2.0kb downstream 6185 true Chr20: 43605171-43611355 Glycine max
Glyma.20G198500 2.0kb downstream 2.0kb downstream 2000 false Chr20: 43605171-43607170 Glycine max
Glyma.20G198500 5.0kb upstream 5.0kb upstream 9185 true Chr20: 43607171-43616355 Glycine max
Glyma.20G198500 5.0kb upstream 5.0kb upstream 5000 false Chr20: 43611356-43616355 Glycine max
Glyma.20G198500 5.0kb downstream 5.0kb downstream 9185 true Chr20: 43602171-43611355 Glycine max
Glyma.20G198500 5.0kb downstream 5.0kb downstream 5000 false Chr20: 43602171-43607170 Glycine max
Glyma.20G198500 10.0kb upstream 10.0kb upstream 14185 true Chr20: 43607171-43621355 Glycine max
Glyma.20G198500 10.0kb upstream 10.0kb upstream 10000 false Chr20: 43611356-43621355 Glycine max
Glyma.20G198500 10.0kb downstream 10.0kb downstream 14185 true Chr20: 43597171-43611355 Glycine max
Glyma.20G198500 10.0kb downstream 10.0kb downstream 10000 false Chr20: 43597171-43607170 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307934 5265 Fabidae View MSA
124066236 5270 Rosid View MSA
123751737 5271 Pentapetalae View MSA
122797656 5272 Eudicot View MSA
122048596 5273 Angiosperm View MSA
123429094 5275 Viridiplantae View MSA
121350139 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.97858 0.0 74.6583   Low
cufflinks 20.9523 0.0 150.502 High  
cufflinks 13.0068 0.0 109.396    
cufflinks 17.5962 0.0 115.7    
cufflinks 16.1041 0.0 119.709    
cufflinks 9.80201 0.0 77.1062    
cufflinks 32.0744 0.0 170.093 High High
cufflinks 14.3379 0.0 98.6748    
cufflinks 6.50098 0.0 86.1194   Low
cufflinks 0.853        
cufflinks 0.089       Low
cufflinks 0.682        
cufflinks 0.664        
cufflinks 1.069        
cufflinks 0.075       Low
cufflinks 0.78        
cufflinks 0.17        
cufflinks 1.401       High
cufflinks 1.021        
cufflinks 0.66        
cufflinks 0.167       Low
cufflinks 0.695        
cufflinks 1.011        
cufflinks 0.148       Low
cufflinks 0.71        
cufflinks 0.195        

0 Strain