Gene : Glyma.20G199000 G. max Wm82.a2.v1
Defline:  (1 of 2) PF00595 - PDZ domain (Also known as DHR or GLGF) (PDZ) Genomic Order:  1990
Name:  ? Glyma.20G199000 Secondary Identifier:  ? PAC:30519940
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G199000 0.5kb upstream 0.5kb upstream 6594 true Chr20: 43673226-43679819 Glycine max
Glyma.20G199000 0.5kb upstream 0.5kb upstream 500 false Chr20: 43679320-43679819 Glycine max
Glyma.20G199000 0.5kb downstream 0.5kb downstream 6594 true Chr20: 43672726-43679319 Glycine max
Glyma.20G199000 0.5kb downstream 0.5kb downstream 500 false Chr20: 43672726-43673225 Glycine max
Glyma.20G199000 1.0kb upstream 1.0kb upstream 7094 true Chr20: 43673226-43680319 Glycine max
Glyma.20G199000 1.0kb upstream 1.0kb upstream 1000 false Chr20: 43679320-43680319 Glycine max
Glyma.20G199000 1.0kb downstream 1.0kb downstream 7094 true Chr20: 43672226-43679319 Glycine max
Glyma.20G199000 1.0kb downstream 1.0kb downstream 1000 false Chr20: 43672226-43673225 Glycine max
Glyma.20G199000 2.0kb upstream 2.0kb upstream 8094 true Chr20: 43673226-43681319 Glycine max
Glyma.20G199000 2.0kb upstream 2.0kb upstream 2000 false Chr20: 43679320-43681319 Glycine max
Glyma.20G199000 2.0kb downstream 2.0kb downstream 8094 true Chr20: 43671226-43679319 Glycine max
Glyma.20G199000 2.0kb downstream 2.0kb downstream 2000 false Chr20: 43671226-43673225 Glycine max
Glyma.20G199000 5.0kb upstream 5.0kb upstream 11094 true Chr20: 43673226-43684319 Glycine max
Glyma.20G199000 5.0kb upstream 5.0kb upstream 5000 false Chr20: 43679320-43684319 Glycine max
Glyma.20G199000 5.0kb downstream 5.0kb downstream 11094 true Chr20: 43668226-43679319 Glycine max
Glyma.20G199000 5.0kb downstream 5.0kb downstream 5000 false Chr20: 43668226-43673225 Glycine max
Glyma.20G199000 10.0kb upstream 10.0kb upstream 16094 true Chr20: 43673226-43689319 Glycine max
Glyma.20G199000 10.0kb upstream 10.0kb upstream 10000 false Chr20: 43679320-43689319 Glycine max
Glyma.20G199000 10.0kb downstream 10.0kb downstream 16094 true Chr20: 43663226-43679319 Glycine max
Glyma.20G199000 10.0kb downstream 10.0kb downstream 10000 false Chr20: 43663226-43673225 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306257 5265 Fabidae View MSA
124060968 5270 Rosid View MSA
123750616 5271 Pentapetalae View MSA
122792134 5272 Eudicot View MSA
122042962 5273 Angiosperm View MSA
121346288 5274 Embryophyte View MSA
123424698 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.0332 0.0 39.6236    
cufflinks 7.16322 0.0 40.4445    
cufflinks 5.93396 0.0 40.2072    
cufflinks 5.76418 0.0 32.5834    
cufflinks 4.36118 0.0 34.1653   Low
cufflinks 6.08808 0.0 41.9398    
cufflinks 4.71563 0.0 29.3355   Low
cufflinks 7.36109 0.0 42.1343    
cufflinks 7.587 0.0 42.6211   High
cufflinks 1.446        
cufflinks 1.282        
cufflinks 1.163        
cufflinks 0.738        
cufflinks 0.622       Low
cufflinks 1.601        
cufflinks 3.342       High
cufflinks 0.43       Low
cufflinks 1.971        
cufflinks 1.861        
cufflinks 2.947       High
cufflinks 0.646       Low
cufflinks 2.445        
cufflinks 2.048        
cufflinks 0.869        
cufflinks 2.693       High
cufflinks 0.408       Low

0 Strain