Gene : Glyma.20G193900 G. max Wm82.a2.v1
Defline:  (1 of 7) PTHR11638//PTHR11638:SF106 - ATP-DEPENDENT CLP PROTEASE Genomic Order:  1939
Name:  ? Glyma.20G193900 Secondary Identifier:  ? PAC:30521334
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G193900 0.5kb upstream 0.5kb upstream 3933 true Chr20: 43270910-43274842 Glycine max
Glyma.20G193900 0.5kb upstream 0.5kb upstream 500 false Chr20: 43270910-43271409 Glycine max
Glyma.20G193900 0.5kb downstream 0.5kb downstream 3933 true Chr20: 43271410-43275342 Glycine max
Glyma.20G193900 0.5kb downstream 0.5kb downstream 500 false Chr20: 43274843-43275342 Glycine max
Glyma.20G193900 1.0kb upstream 1.0kb upstream 4433 true Chr20: 43270410-43274842 Glycine max
Glyma.20G193900 1.0kb upstream 1.0kb upstream 1000 false Chr20: 43270410-43271409 Glycine max
Glyma.20G193900 1.0kb downstream 1.0kb downstream 4433 true Chr20: 43271410-43275842 Glycine max
Glyma.20G193900 1.0kb downstream 1.0kb downstream 1000 false Chr20: 43274843-43275842 Glycine max
Glyma.20G193900 2.0kb upstream 2.0kb upstream 5433 true Chr20: 43269410-43274842 Glycine max
Glyma.20G193900 2.0kb upstream 2.0kb upstream 2000 false Chr20: 43269410-43271409 Glycine max
Glyma.20G193900 2.0kb downstream 2.0kb downstream 5433 true Chr20: 43271410-43276842 Glycine max
Glyma.20G193900 2.0kb downstream 2.0kb downstream 2000 false Chr20: 43274843-43276842 Glycine max
Glyma.20G193900 5.0kb upstream 5.0kb upstream 8433 true Chr20: 43266410-43274842 Glycine max
Glyma.20G193900 5.0kb upstream 5.0kb upstream 5000 false Chr20: 43266410-43271409 Glycine max
Glyma.20G193900 5.0kb downstream 5.0kb downstream 8433 true Chr20: 43271410-43279842 Glycine max
Glyma.20G193900 5.0kb downstream 5.0kb downstream 5000 false Chr20: 43274843-43279842 Glycine max
Glyma.20G193900 10.0kb upstream 10.0kb upstream 13433 true Chr20: 43261410-43274842 Glycine max
Glyma.20G193900 10.0kb upstream 10.0kb upstream 10000 false Chr20: 43261410-43271409 Glycine max
Glyma.20G193900 10.0kb downstream 10.0kb downstream 13433 true Chr20: 43271410-43284842 Glycine max
Glyma.20G193900 10.0kb downstream 10.0kb downstream 10000 false Chr20: 43274843-43284842 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309511 5265 Fabidae View MSA
124070007 5270 Rosid View MSA
123743418 5271 Pentapetalae View MSA
122787302 5272 Eudicot View MSA
122049419 5273 Angiosperm View MSA
121351273 5274 Embryophyte View MSA
123382090 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.56508 0.0 4.88529    
cufflinks 4.09142 0.0 11.3114   High
cufflinks 0.634267 0.0 2.20211    
cufflinks 1.95869 0.0 5.89277    
cufflinks 0.991393 0.0 3.30179    
cufflinks 0.319724 0.0 1.17045   Low
cufflinks 0.71188 0.0 2.46148    
cufflinks 2.71262 0.0 7.81143   High
cufflinks 1.1233 0.0 3.66392    
cufflinks 2.607        
cufflinks 0.483        
cufflinks 1.451        
cufflinks 1.316        
cufflinks 0.705        
cufflinks 0.095       Low
cufflinks 3.157        
cufflinks 0.236       Low
cufflinks 3.008        
cufflinks 2.318        
cufflinks 2.727        
cufflinks 1.027        
cufflinks 3.352        
cufflinks 2.854        
cufflinks 0.416       Low
cufflinks 2.636        
cufflinks 0.858        

0 Strain