Gene : Glyma.20G188400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12419//PTHR12419:SF14 - OTU DOMAIN CONTAINING PROTEIN Genomic Order:  1884
Name:  ? Glyma.20G188400 Secondary Identifier:  ? PAC:30521955
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G188400 0.5kb upstream 0.5kb upstream 3649 true Chr20: 42705536-42709184 Glycine max
Glyma.20G188400 0.5kb upstream 0.5kb upstream 500 false Chr20: 42708685-42709184 Glycine max
Glyma.20G188400 0.5kb downstream 0.5kb downstream 3649 true Chr20: 42705036-42708684 Glycine max
Glyma.20G188400 0.5kb downstream 0.5kb downstream 500 false Chr20: 42705036-42705535 Glycine max
Glyma.20G188400 1.0kb upstream 1.0kb upstream 4149 true Chr20: 42705536-42709684 Glycine max
Glyma.20G188400 1.0kb upstream 1.0kb upstream 1000 false Chr20: 42708685-42709684 Glycine max
Glyma.20G188400 1.0kb downstream 1.0kb downstream 4149 true Chr20: 42704536-42708684 Glycine max
Glyma.20G188400 1.0kb downstream 1.0kb downstream 1000 false Chr20: 42704536-42705535 Glycine max
Glyma.20G188400 2.0kb upstream 2.0kb upstream 5149 true Chr20: 42705536-42710684 Glycine max
Glyma.20G188400 2.0kb upstream 2.0kb upstream 2000 false Chr20: 42708685-42710684 Glycine max
Glyma.20G188400 2.0kb downstream 2.0kb downstream 5149 true Chr20: 42703536-42708684 Glycine max
Glyma.20G188400 2.0kb downstream 2.0kb downstream 2000 false Chr20: 42703536-42705535 Glycine max
Glyma.20G188400 5.0kb upstream 5.0kb upstream 8149 true Chr20: 42705536-42713684 Glycine max
Glyma.20G188400 5.0kb upstream 5.0kb upstream 5000 false Chr20: 42708685-42713684 Glycine max
Glyma.20G188400 5.0kb downstream 5.0kb downstream 8149 true Chr20: 42700536-42708684 Glycine max
Glyma.20G188400 5.0kb downstream 5.0kb downstream 5000 false Chr20: 42700536-42705535 Glycine max
Glyma.20G188400 10.0kb upstream 10.0kb upstream 13149 true Chr20: 42705536-42718684 Glycine max
Glyma.20G188400 10.0kb upstream 10.0kb upstream 10000 false Chr20: 42708685-42718684 Glycine max
Glyma.20G188400 10.0kb downstream 10.0kb downstream 13149 true Chr20: 42695536-42708684 Glycine max
Glyma.20G188400 10.0kb downstream 10.0kb downstream 10000 false Chr20: 42695536-42705535 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124074941 5270 Rosid View MSA
122301019 5265 Fabidae View MSA
123749661 5271 Pentapetalae View MSA
122794711 5272 Eudicot View MSA
122048756 5273 Angiosperm View MSA
121349238 5274 Embryophyte View MSA
123428485 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 42.5593 0.0 116.432 High High
cufflinks 5.17425 0.0 15.2903    
cufflinks 67.0203 0.0 191.425 High High
cufflinks 7.00175 0.0 19.9147    
cufflinks 6.52487 0.0 18.6432    
cufflinks 11.1399 0.0 30.3556    
cufflinks 4.16735 0.0 12.6602    
cufflinks 8.68336 0.0 24.1963    
cufflinks 6.00261 0.0 17.372    
cufflinks 3.268        
cufflinks 6.134     High High
cufflinks 15.944     High High
cufflinks 2.891        
cufflinks 1.867       Low
cufflinks 3.098        
cufflinks 2.777        
cufflinks 4.545        
cufflinks 2.915        
cufflinks 3.291        
cufflinks 2.956        
cufflinks 3.584        
cufflinks 3.587        
cufflinks 3.809        
cufflinks 5.089        
cufflinks 2.536        
cufflinks 2.836        

0 Strain