Gene : Glyma.20G226300 G. max Wm82.a2.v1
Defline:  (1 of 2) 4.1.1.21 - Phosphoribosylaminoimidazole carboxylase / AIR carboxylase Genomic Order:  2263
Name:  ? Glyma.20G226300 Secondary Identifier:  ? PAC:30522299
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-6124 Glycine max pathologic  
Gmax PWY-841 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G226300 0.5kb upstream 0.5kb upstream 8539 true Chr20: 46028429-46036967 Glycine max
Glyma.20G226300 0.5kb upstream 0.5kb upstream 500 false Chr20: 46028429-46028928 Glycine max
Glyma.20G226300 0.5kb downstream 0.5kb downstream 8539 true Chr20: 46028929-46037467 Glycine max
Glyma.20G226300 0.5kb downstream 0.5kb downstream 500 false Chr20: 46036968-46037467 Glycine max
Glyma.20G226300 1.0kb upstream 1.0kb upstream 9039 true Chr20: 46027929-46036967 Glycine max
Glyma.20G226300 1.0kb upstream 1.0kb upstream 1000 false Chr20: 46027929-46028928 Glycine max
Glyma.20G226300 1.0kb downstream 1.0kb downstream 9039 true Chr20: 46028929-46037967 Glycine max
Glyma.20G226300 1.0kb downstream 1.0kb downstream 1000 false Chr20: 46036968-46037967 Glycine max
Glyma.20G226300 2.0kb upstream 2.0kb upstream 10039 true Chr20: 46026929-46036967 Glycine max
Glyma.20G226300 2.0kb upstream 2.0kb upstream 2000 false Chr20: 46026929-46028928 Glycine max
Glyma.20G226300 2.0kb downstream 2.0kb downstream 10039 true Chr20: 46028929-46038967 Glycine max
Glyma.20G226300 2.0kb downstream 2.0kb downstream 2000 false Chr20: 46036968-46038967 Glycine max
Glyma.20G226300 5.0kb upstream 5.0kb upstream 13039 true Chr20: 46023929-46036967 Glycine max
Glyma.20G226300 5.0kb upstream 5.0kb upstream 5000 false Chr20: 46023929-46028928 Glycine max
Glyma.20G226300 5.0kb downstream 5.0kb downstream 13039 true Chr20: 46028929-46041967 Glycine max
Glyma.20G226300 5.0kb downstream 5.0kb downstream 5000 false Chr20: 46036968-46041967 Glycine max
Glyma.20G226300 10.0kb upstream 10.0kb upstream 18039 true Chr20: 46018929-46036967 Glycine max
Glyma.20G226300 10.0kb upstream 10.0kb upstream 10000 false Chr20: 46018929-46028928 Glycine max
Glyma.20G226300 10.0kb downstream 10.0kb downstream 18039 true Chr20: 46028929-46046967 Glycine max
Glyma.20G226300 10.0kb downstream 10.0kb downstream 10000 false Chr20: 46036968-46046967 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308610 5265 Fabidae View MSA
124064893 5270 Rosid View MSA
123748384 5271 Pentapetalae View MSA
122790389 5272 Eudicot View MSA
122043847 5273 Angiosperm View MSA
121345366 5274 Embryophyte View MSA
123425127 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.2694 0.0 45.8826    
cufflinks 4.89468 0.0 22.6261    
cufflinks 6.15653 0.0 29.234    
cufflinks 3.64443 0.0 20.0471    
cufflinks 13.3745 0.0 59.0928    
cufflinks 9.75303 0.0 42.6067    
cufflinks 2.20192 0.0 10.1541   Low
cufflinks 8.22769 0.0 40.3779    
cufflinks 21.4283 0.0 105.824 High High
cufflinks 0.282        
cufflinks 0.204       Low
cufflinks 0.336        
cufflinks 0.643        
cufflinks 0.513        
cufflinks 1.077       High
cufflinks 0.349        
cufflinks 0.98       High
cufflinks 0.271        
cufflinks 0.418        
cufflinks 0.235        
cufflinks 0.434        
cufflinks 0.27        
cufflinks 0.349        
cufflinks 0.301        
cufflinks 0.213       Low
cufflinks 0.938       High

0 Strain