Gene : Glyma.20G221600 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR12686 - 3'-5' EXORIBONUCLEASE CSL4-RELATED Genomic Order:  2216
Name:  ? Glyma.20G221600 Secondary Identifier:  ? PAC:30519894
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G221600 0.5kb upstream 0.5kb upstream 2610 true Chr20: 45657766-45660375 Glycine max
Glyma.20G221600 0.5kb upstream 0.5kb upstream 500 false Chr20: 45659876-45660375 Glycine max
Glyma.20G221600 0.5kb downstream 0.5kb downstream 2610 true Chr20: 45657266-45659875 Glycine max
Glyma.20G221600 0.5kb downstream 0.5kb downstream 500 false Chr20: 45657266-45657765 Glycine max
Glyma.20G221600 1.0kb upstream 1.0kb upstream 3110 true Chr20: 45657766-45660875 Glycine max
Glyma.20G221600 1.0kb upstream 1.0kb upstream 1000 false Chr20: 45659876-45660875 Glycine max
Glyma.20G221600 1.0kb downstream 1.0kb downstream 3110 true Chr20: 45656766-45659875 Glycine max
Glyma.20G221600 1.0kb downstream 1.0kb downstream 1000 false Chr20: 45656766-45657765 Glycine max
Glyma.20G221600 2.0kb upstream 2.0kb upstream 4110 true Chr20: 45657766-45661875 Glycine max
Glyma.20G221600 2.0kb upstream 2.0kb upstream 2000 false Chr20: 45659876-45661875 Glycine max
Glyma.20G221600 2.0kb downstream 2.0kb downstream 4110 true Chr20: 45655766-45659875 Glycine max
Glyma.20G221600 2.0kb downstream 2.0kb downstream 2000 false Chr20: 45655766-45657765 Glycine max
Glyma.20G221600 5.0kb upstream 5.0kb upstream 7110 true Chr20: 45657766-45664875 Glycine max
Glyma.20G221600 5.0kb upstream 5.0kb upstream 5000 false Chr20: 45659876-45664875 Glycine max
Glyma.20G221600 5.0kb downstream 5.0kb downstream 7110 true Chr20: 45652766-45659875 Glycine max
Glyma.20G221600 5.0kb downstream 5.0kb downstream 5000 false Chr20: 45652766-45657765 Glycine max
Glyma.20G221600 10.0kb upstream 10.0kb upstream 12110 true Chr20: 45657766-45669875 Glycine max
Glyma.20G221600 10.0kb upstream 10.0kb upstream 10000 false Chr20: 45659876-45669875 Glycine max
Glyma.20G221600 10.0kb downstream 10.0kb downstream 12110 true Chr20: 45647766-45659875 Glycine max
Glyma.20G221600 10.0kb downstream 10.0kb downstream 10000 false Chr20: 45647766-45657765 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121607136 5273 Angiosperm Singleton cluster - no MSA
122238336 5265 Fabidae Singleton cluster - no MSA
123983778 5270 Rosid Singleton cluster - no MSA
123559351 5271 Pentapetalae Singleton cluster - no MSA
122594157 5272 Eudicot Singleton cluster - no MSA
120879418 5274 Embryophyte Singleton cluster - no MSA
122920294 5275 Viridiplantae Singleton cluster - no MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0324519 0.0 0.195085 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.111        
cufflinks 0.041     Low Low
cufflinks 0.097     Low  
cufflinks 0.377       High
cufflinks 0.5       High
cufflinks 0.063       Low
cufflinks 0.14        
cufflinks 0.118        
cufflinks 0.203        
cufflinks 0.194        
cufflinks 0.124        
cufflinks 0.041     Low Low
cufflinks 0.106        
cufflinks 0.167        
cufflinks 0.103        
cufflinks 0.141        
cufflinks 0.13        

0 Strain