Gene : Glyma.20G216900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23322:SF1 - FAS-ASSOCIATED FACTOR 2 Genomic Order:  2169
Name:  ? Glyma.20G216900 Secondary Identifier:  ? PAC:30520486
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G216900 0.5kb upstream 0.5kb upstream 5416 true Chr20: 45268701-45274116 Glycine max
Glyma.20G216900 0.5kb upstream 0.5kb upstream 500 false Chr20: 45268701-45269200 Glycine max
Glyma.20G216900 0.5kb downstream 0.5kb downstream 5416 true Chr20: 45269201-45274616 Glycine max
Glyma.20G216900 0.5kb downstream 0.5kb downstream 500 false Chr20: 45274117-45274616 Glycine max
Glyma.20G216900 1.0kb upstream 1.0kb upstream 5916 true Chr20: 45268201-45274116 Glycine max
Glyma.20G216900 1.0kb upstream 1.0kb upstream 1000 false Chr20: 45268201-45269200 Glycine max
Glyma.20G216900 1.0kb downstream 1.0kb downstream 5916 true Chr20: 45269201-45275116 Glycine max
Glyma.20G216900 1.0kb downstream 1.0kb downstream 1000 false Chr20: 45274117-45275116 Glycine max
Glyma.20G216900 2.0kb upstream 2.0kb upstream 6916 true Chr20: 45267201-45274116 Glycine max
Glyma.20G216900 2.0kb upstream 2.0kb upstream 2000 false Chr20: 45267201-45269200 Glycine max
Glyma.20G216900 2.0kb downstream 2.0kb downstream 6916 true Chr20: 45269201-45276116 Glycine max
Glyma.20G216900 2.0kb downstream 2.0kb downstream 2000 false Chr20: 45274117-45276116 Glycine max
Glyma.20G216900 5.0kb upstream 5.0kb upstream 9916 true Chr20: 45264201-45274116 Glycine max
Glyma.20G216900 5.0kb upstream 5.0kb upstream 5000 false Chr20: 45264201-45269200 Glycine max
Glyma.20G216900 5.0kb downstream 5.0kb downstream 9916 true Chr20: 45269201-45279116 Glycine max
Glyma.20G216900 5.0kb downstream 5.0kb downstream 5000 false Chr20: 45274117-45279116 Glycine max
Glyma.20G216900 10.0kb upstream 10.0kb upstream 14916 true Chr20: 45259201-45274116 Glycine max
Glyma.20G216900 10.0kb upstream 10.0kb upstream 10000 false Chr20: 45259201-45269200 Glycine max
Glyma.20G216900 10.0kb downstream 10.0kb downstream 14916 true Chr20: 45269201-45284116 Glycine max
Glyma.20G216900 10.0kb downstream 10.0kb downstream 10000 false Chr20: 45274117-45284116 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122238260 5265 Fabidae Singleton cluster - no MSA
123983711 5270 Rosid Singleton cluster - no MSA
123749858 5271 Pentapetalae View MSA
122791969 5272 Eudicot View MSA
122043233 5273 Angiosperm View MSA
121344275 5274 Embryophyte View MSA
123424827 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.3951 0.0 46.4083   High
cufflinks 11.5259 0.0 31.0356   Low
cufflinks 16.6004 0.0 44.3    
cufflinks 15.8349 0.0 42.2632    
cufflinks 14.3055 0.0 38.208    
cufflinks 13.9297 0.0 37.2439    
cufflinks 12.4619 0.0 33.408   Low
cufflinks 15.5209 0.0 41.4285    
cufflinks 14.6845 0.0 39.2244    
cufflinks 4.251        
cufflinks 3.018       Low
cufflinks 4.208        
cufflinks 4.838       High
cufflinks 5.036       High
cufflinks 2.486       Low
cufflinks 4.199        
cufflinks 2.915       Low
cufflinks 3.94        
cufflinks 4.311        
cufflinks 3.847        
cufflinks 3.372        
cufflinks 4.059        
cufflinks 3.777        
cufflinks 3.603        
cufflinks 3.682        
cufflinks 2.991       Low

0 Strain