Gene : Glyma.20G218300 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR23198 - NUCLEOPORIN Genomic Order:  2183
Name:  ? Glyma.20G218300 Secondary Identifier:  ? PAC:30519624
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G218300 0.5kb upstream 0.5kb upstream 3423 true Chr20: 45399041-45402463 Glycine max
Glyma.20G218300 0.5kb upstream 0.5kb upstream 500 false Chr20: 45401964-45402463 Glycine max
Glyma.20G218300 0.5kb downstream 0.5kb downstream 3423 true Chr20: 45398541-45401963 Glycine max
Glyma.20G218300 0.5kb downstream 0.5kb downstream 500 false Chr20: 45398541-45399040 Glycine max
Glyma.20G218300 1.0kb upstream 1.0kb upstream 3923 true Chr20: 45399041-45402963 Glycine max
Glyma.20G218300 1.0kb upstream 1.0kb upstream 1000 false Chr20: 45401964-45402963 Glycine max
Glyma.20G218300 1.0kb downstream 1.0kb downstream 3923 true Chr20: 45398041-45401963 Glycine max
Glyma.20G218300 1.0kb downstream 1.0kb downstream 1000 false Chr20: 45398041-45399040 Glycine max
Glyma.20G218300 2.0kb upstream 2.0kb upstream 4923 true Chr20: 45399041-45403963 Glycine max
Glyma.20G218300 2.0kb upstream 2.0kb upstream 2000 false Chr20: 45401964-45403963 Glycine max
Glyma.20G218300 2.0kb downstream 2.0kb downstream 4923 true Chr20: 45397041-45401963 Glycine max
Glyma.20G218300 2.0kb downstream 2.0kb downstream 2000 false Chr20: 45397041-45399040 Glycine max
Glyma.20G218300 5.0kb upstream 5.0kb upstream 7923 true Chr20: 45399041-45406963 Glycine max
Glyma.20G218300 5.0kb upstream 5.0kb upstream 5000 false Chr20: 45401964-45406963 Glycine max
Glyma.20G218300 5.0kb downstream 5.0kb downstream 7923 true Chr20: 45394041-45401963 Glycine max
Glyma.20G218300 5.0kb downstream 5.0kb downstream 5000 false Chr20: 45394041-45399040 Glycine max
Glyma.20G218300 10.0kb upstream 10.0kb upstream 12923 true Chr20: 45399041-45411963 Glycine max
Glyma.20G218300 10.0kb upstream 10.0kb upstream 10000 false Chr20: 45401964-45411963 Glycine max
Glyma.20G218300 10.0kb downstream 10.0kb downstream 12923 true Chr20: 45389041-45401963 Glycine max
Glyma.20G218300 10.0kb downstream 10.0kb downstream 10000 false Chr20: 45389041-45399040 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314697 5265 Fabidae View MSA
124038816 5270 Rosid View MSA
123752592 5271 Pentapetalae View MSA
122797875 5272 Eudicot View MSA
122041710 5273 Angiosperm View MSA
121349617 5274 Embryophyte View MSA
123427472 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.346043 0.0 1.31602    
cufflinks 0.137854 0.0 0.544389 Low Low
cufflinks 1.21723 0.0 4.31622   High
cufflinks 1.01844 0.0 3.65763   High
cufflinks 0.342424 0.0 1.30212    
cufflinks 0.570502 0.0 2.11786    
cufflinks 0.302713 0.0 1.15794    
cufflinks 0.470036 0.0 1.76104    
cufflinks 0.339573 0.0 1.29147    
cufflinks 0.47        
cufflinks 1.711       High
cufflinks 0.885        
cufflinks 1.001        
cufflinks 1.068        
cufflinks 3.712       High
cufflinks 0.252       Low
cufflinks 0.37        
cufflinks 0.359        
cufflinks 0.413        
cufflinks 0.312        
cufflinks 1.397        
cufflinks 0.265       Low
cufflinks 0.241       Low
cufflinks 1.296        
cufflinks 0.355        
cufflinks 0.902        

0 Strain