Gene : Glyma.20G212200 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31500:SF18 - AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN-RELATED Genomic Order:  2122
Name:  ? Glyma.20G212200 Secondary Identifier:  ? PAC:30520719
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G212200 0.5kb upstream 0.5kb upstream 6669 true Chr20: 44875738-44882406 Glycine max
Glyma.20G212200 0.5kb upstream 0.5kb upstream 500 false Chr20: 44875738-44876237 Glycine max
Glyma.20G212200 0.5kb downstream 0.5kb downstream 6669 true Chr20: 44876238-44882906 Glycine max
Glyma.20G212200 0.5kb downstream 0.5kb downstream 500 false Chr20: 44882407-44882906 Glycine max
Glyma.20G212200 1.0kb upstream 1.0kb upstream 7169 true Chr20: 44875238-44882406 Glycine max
Glyma.20G212200 1.0kb upstream 1.0kb upstream 1000 false Chr20: 44875238-44876237 Glycine max
Glyma.20G212200 1.0kb downstream 1.0kb downstream 7169 true Chr20: 44876238-44883406 Glycine max
Glyma.20G212200 1.0kb downstream 1.0kb downstream 1000 false Chr20: 44882407-44883406 Glycine max
Glyma.20G212200 2.0kb upstream 2.0kb upstream 8169 true Chr20: 44874238-44882406 Glycine max
Glyma.20G212200 2.0kb upstream 2.0kb upstream 2000 false Chr20: 44874238-44876237 Glycine max
Glyma.20G212200 2.0kb downstream 2.0kb downstream 8169 true Chr20: 44876238-44884406 Glycine max
Glyma.20G212200 2.0kb downstream 2.0kb downstream 2000 false Chr20: 44882407-44884406 Glycine max
Glyma.20G212200 5.0kb upstream 5.0kb upstream 11169 true Chr20: 44871238-44882406 Glycine max
Glyma.20G212200 5.0kb upstream 5.0kb upstream 5000 false Chr20: 44871238-44876237 Glycine max
Glyma.20G212200 5.0kb downstream 5.0kb downstream 11169 true Chr20: 44876238-44887406 Glycine max
Glyma.20G212200 5.0kb downstream 5.0kb downstream 5000 false Chr20: 44882407-44887406 Glycine max
Glyma.20G212200 10.0kb upstream 10.0kb upstream 16169 true Chr20: 44866238-44882406 Glycine max
Glyma.20G212200 10.0kb upstream 10.0kb upstream 10000 false Chr20: 44866238-44876237 Glycine max
Glyma.20G212200 10.0kb downstream 10.0kb downstream 16169 true Chr20: 44876238-44892406 Glycine max
Glyma.20G212200 10.0kb downstream 10.0kb downstream 10000 false Chr20: 44882407-44892406 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302074 5265 Fabidae View MSA
124071035 5270 Rosid View MSA
123753724 5271 Pentapetalae View MSA
122796118 5272 Eudicot View MSA
122049850 5273 Angiosperm View MSA
121348420 5274 Embryophyte View MSA
123380859 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.74266 0.0 26.4595    
cufflinks 3.77669 0.0 11.3286   Low
cufflinks 5.39279 0.0 15.405   Low
cufflinks 6.63436 0.0 18.556    
cufflinks 11.7105 0.0 31.5085    
cufflinks 14.8925 0.0 39.778   High
cufflinks 9.87945 0.0 26.8225    
cufflinks 9.94177 0.0 26.9681    
cufflinks 13.3743 0.0 35.8121    
cufflinks 1.31        
cufflinks 2.37        
cufflinks 1.412        
cufflinks 3.86       High
cufflinks 3.825       High
cufflinks 1.676        
cufflinks 0.847       Low
cufflinks 2.175        
cufflinks 0.773       Low
cufflinks 1.514        
cufflinks 0.921       Low
cufflinks 2.051        
cufflinks 0.98        
cufflinks 1.021        
cufflinks 2.6        
cufflinks 0.786       Low
cufflinks 3.067       High

0 Strain