Gene : Glyma.20G240400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13748//PTHR13748:SF43 - COBW-RELATED Genomic Order:  2404
Name:  ? Glyma.20G240400 Secondary Identifier:  ? PAC:30520436
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G240400 0.5kb upstream 0.5kb upstream 3904 true Chr20: 47166228-47170131 Glycine max
Glyma.20G240400 0.5kb upstream 0.5kb upstream 500 false Chr20: 47166228-47166727 Glycine max
Glyma.20G240400 0.5kb downstream 0.5kb downstream 3904 true Chr20: 47166728-47170631 Glycine max
Glyma.20G240400 0.5kb downstream 0.5kb downstream 500 false Chr20: 47170132-47170631 Glycine max
Glyma.20G240400 1.0kb upstream 1.0kb upstream 4404 true Chr20: 47165728-47170131 Glycine max
Glyma.20G240400 1.0kb upstream 1.0kb upstream 1000 false Chr20: 47165728-47166727 Glycine max
Glyma.20G240400 1.0kb downstream 1.0kb downstream 4404 true Chr20: 47166728-47171131 Glycine max
Glyma.20G240400 1.0kb downstream 1.0kb downstream 1000 false Chr20: 47170132-47171131 Glycine max
Glyma.20G240400 2.0kb upstream 2.0kb upstream 5404 true Chr20: 47164728-47170131 Glycine max
Glyma.20G240400 2.0kb upstream 2.0kb upstream 2000 false Chr20: 47164728-47166727 Glycine max
Glyma.20G240400 2.0kb downstream 2.0kb downstream 5404 true Chr20: 47166728-47172131 Glycine max
Glyma.20G240400 2.0kb downstream 2.0kb downstream 2000 false Chr20: 47170132-47172131 Glycine max
Glyma.20G240400 5.0kb upstream 5.0kb upstream 8404 true Chr20: 47161728-47170131 Glycine max
Glyma.20G240400 5.0kb upstream 5.0kb upstream 5000 false Chr20: 47161728-47166727 Glycine max
Glyma.20G240400 5.0kb downstream 5.0kb downstream 8404 true Chr20: 47166728-47175131 Glycine max
Glyma.20G240400 5.0kb downstream 5.0kb downstream 5000 false Chr20: 47170132-47175131 Glycine max
Glyma.20G240400 10.0kb upstream 10.0kb upstream 13404 true Chr20: 47156728-47170131 Glycine max
Glyma.20G240400 10.0kb upstream 10.0kb upstream 10000 false Chr20: 47156728-47166727 Glycine max
Glyma.20G240400 10.0kb downstream 10.0kb downstream 13404 true Chr20: 47166728-47180131 Glycine max
Glyma.20G240400 10.0kb downstream 10.0kb downstream 10000 false Chr20: 47170132-47180131 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308801 5265 Fabidae View MSA
124064492 5270 Rosid View MSA
123740688 5271 Pentapetalae View MSA
122793124 5272 Eudicot View MSA
122047317 5273 Angiosperm View MSA
121346816 5274 Embryophyte View MSA
123428327 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.0402 0.0 27.3682   High
cufflinks 6.27933 0.0 17.8296    
cufflinks 2.10247 0.0 6.9213   Low
cufflinks 5.91441 0.0 16.9139    
cufflinks 4.77011 0.0 14.0157    
cufflinks 1.87703 0.0 6.27409   Low
cufflinks 6.34974 0.0 18.0381    
cufflinks 3.94513 0.0 11.8707    
cufflinks 3.87537 0.0 11.6953    
cufflinks 1.499        
cufflinks 0.262       Low
cufflinks 2.599        
cufflinks 2.363        
cufflinks 2.513        
cufflinks 0.61        
cufflinks 6.277       High
cufflinks 0.483       Low
cufflinks 2.705        
cufflinks 4.21        
cufflinks 5.503        
cufflinks 0.38       Low
cufflinks 5.013        
cufflinks 6.533       High
cufflinks 0.224       Low
cufflinks 5.769       High
cufflinks 0.56        

0 Strain