Gene : Glyma.20G240500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR10644:SF1 - SPLICING FACTOR 3B SUBUNIT 3 Genomic Order:  2405
Name:  ? Glyma.20G240500 Secondary Identifier:  ? PAC:30521204
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G240500 0.5kb upstream 0.5kb upstream 6066 true Chr20: 47171807-47177872 Glycine max
Glyma.20G240500 0.5kb upstream 0.5kb upstream 500 false Chr20: 47171807-47172306 Glycine max
Glyma.20G240500 0.5kb downstream 0.5kb downstream 6066 true Chr20: 47172307-47178372 Glycine max
Glyma.20G240500 0.5kb downstream 0.5kb downstream 500 false Chr20: 47177873-47178372 Glycine max
Glyma.20G240500 1.0kb upstream 1.0kb upstream 6566 true Chr20: 47171307-47177872 Glycine max
Glyma.20G240500 1.0kb upstream 1.0kb upstream 1000 false Chr20: 47171307-47172306 Glycine max
Glyma.20G240500 1.0kb downstream 1.0kb downstream 6566 true Chr20: 47172307-47178872 Glycine max
Glyma.20G240500 1.0kb downstream 1.0kb downstream 1000 false Chr20: 47177873-47178872 Glycine max
Glyma.20G240500 2.0kb upstream 2.0kb upstream 7566 true Chr20: 47170307-47177872 Glycine max
Glyma.20G240500 2.0kb upstream 2.0kb upstream 2000 false Chr20: 47170307-47172306 Glycine max
Glyma.20G240500 2.0kb downstream 2.0kb downstream 7566 true Chr20: 47172307-47179872 Glycine max
Glyma.20G240500 2.0kb downstream 2.0kb downstream 2000 false Chr20: 47177873-47179872 Glycine max
Glyma.20G240500 5.0kb upstream 5.0kb upstream 10566 true Chr20: 47167307-47177872 Glycine max
Glyma.20G240500 5.0kb upstream 5.0kb upstream 5000 false Chr20: 47167307-47172306 Glycine max
Glyma.20G240500 5.0kb downstream 5.0kb downstream 10566 true Chr20: 47172307-47182872 Glycine max
Glyma.20G240500 5.0kb downstream 5.0kb downstream 5000 false Chr20: 47177873-47182872 Glycine max
Glyma.20G240500 10.0kb upstream 10.0kb upstream 15566 true Chr20: 47162307-47177872 Glycine max
Glyma.20G240500 10.0kb upstream 10.0kb upstream 10000 false Chr20: 47162307-47172306 Glycine max
Glyma.20G240500 10.0kb downstream 10.0kb downstream 15566 true Chr20: 47172307-47187872 Glycine max
Glyma.20G240500 10.0kb downstream 10.0kb downstream 10000 false Chr20: 47177873-47187872 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305797 5265 Fabidae View MSA
124069298 5270 Rosid View MSA
123746995 5271 Pentapetalae View MSA
122794843 5272 Eudicot View MSA
122048690 5273 Angiosperm View MSA
121348178 5274 Embryophyte View MSA
123426142 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.12648 0.0 16.3566    
cufflinks 7.67152 0.0 20.4774    
cufflinks 3.59051 0.0 9.77551   Low
cufflinks 7.85935 0.0 20.9866    
cufflinks 7.62402 0.0 20.3502    
cufflinks 3.22239 0.0 8.84227   Low
cufflinks 9.13631 0.0 24.4682   High
cufflinks 4.97367 0.0 13.3399    
cufflinks 5.8671 0.0 15.6722    
cufflinks 4.23        
cufflinks 1.014       Low
cufflinks 6.672        
cufflinks 6.542        
cufflinks 8.041     High  
cufflinks 3.482        
cufflinks 7.092        
cufflinks 1.708       Low
cufflinks 8.034     High  
cufflinks 9.509     High High
cufflinks 6.202        
cufflinks 1.638       Low
cufflinks 6.781        
cufflinks 6.98        
cufflinks 1.519       Low
cufflinks 6.229        
cufflinks 1.918       Low

0 Strain