Gene : Glyma.20G230300 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR21089//PTHR21089:SF12 - SHIKIMATE DEHYDROGENASE Genomic Order:  2303
Name:  ? Glyma.20G230300 Secondary Identifier:  ? PAC:30519652
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax ARO-PWY Glycine max pathologic  
Gmax PWY-6163 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G230300 0.5kb upstream 0.5kb upstream 4741 true Chr20: 46439082-46443822 Glycine max
Glyma.20G230300 0.5kb upstream 0.5kb upstream 500 false Chr20: 46439082-46439581 Glycine max
Glyma.20G230300 0.5kb downstream 0.5kb downstream 4741 true Chr20: 46439582-46444322 Glycine max
Glyma.20G230300 0.5kb downstream 0.5kb downstream 500 false Chr20: 46443823-46444322 Glycine max
Glyma.20G230300 1.0kb upstream 1.0kb upstream 5241 true Chr20: 46438582-46443822 Glycine max
Glyma.20G230300 1.0kb upstream 1.0kb upstream 1000 false Chr20: 46438582-46439581 Glycine max
Glyma.20G230300 1.0kb downstream 1.0kb downstream 5241 true Chr20: 46439582-46444822 Glycine max
Glyma.20G230300 1.0kb downstream 1.0kb downstream 1000 false Chr20: 46443823-46444822 Glycine max
Glyma.20G230300 2.0kb upstream 2.0kb upstream 6241 true Chr20: 46437582-46443822 Glycine max
Glyma.20G230300 2.0kb upstream 2.0kb upstream 2000 false Chr20: 46437582-46439581 Glycine max
Glyma.20G230300 2.0kb downstream 2.0kb downstream 6241 true Chr20: 46439582-46445822 Glycine max
Glyma.20G230300 2.0kb downstream 2.0kb downstream 2000 false Chr20: 46443823-46445822 Glycine max
Glyma.20G230300 5.0kb upstream 5.0kb upstream 9241 true Chr20: 46434582-46443822 Glycine max
Glyma.20G230300 5.0kb upstream 5.0kb upstream 5000 false Chr20: 46434582-46439581 Glycine max
Glyma.20G230300 5.0kb downstream 5.0kb downstream 9241 true Chr20: 46439582-46448822 Glycine max
Glyma.20G230300 5.0kb downstream 5.0kb downstream 5000 false Chr20: 46443823-46448822 Glycine max
Glyma.20G230300 10.0kb upstream 10.0kb upstream 14241 true Chr20: 46429582-46443822 Glycine max
Glyma.20G230300 10.0kb upstream 10.0kb upstream 10000 false Chr20: 46429582-46439581 Glycine max
Glyma.20G230300 10.0kb downstream 10.0kb downstream 14241 true Chr20: 46439582-46453822 Glycine max
Glyma.20G230300 10.0kb downstream 10.0kb downstream 10000 false Chr20: 46443823-46453822 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302513 5265 Fabidae View MSA
124071132 5270 Rosid View MSA
123743031 5271 Pentapetalae View MSA
122788487 5272 Eudicot View MSA
122045026 5273 Angiosperm View MSA
121345779 5274 Embryophyte View MSA
123427556 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0216227 0.0 0.0921451 Low Low
cufflinks 6.99579 0.0 19.3032   High
cufflinks 1.00882 0.0 3.52041    
cufflinks 0.139587 0.0 0.543041 Low  
cufflinks 0.0546665 0.0 0.22029 Low  
cufflinks 0.868674 0.0 3.0757    
cufflinks 0.694342 0.0 2.49644    
cufflinks 0.179015 0.0 0.688776 Low  
cufflinks 0.0106895 0.0 0.0483487 Low Low
cufflinks 0.04     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.076        
cufflinks 0.034     Low  
cufflinks 0.026     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.813        
cufflinks 0.01     Low Low
cufflinks 0.725        
cufflinks 4.959       High
cufflinks 0.641        
cufflinks 0.006     Low Low
cufflinks 0.771        
cufflinks 0.673        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.029        
cufflinks 0.007     Low Low

0 Strain