Gene : Glyma.U011300 G. max Wm82.a2.v1
Defline:  (1 of 4) PF09341 - Transcription factor Pcc1 (Pcc1) Genomic Order:  22
Name:  ? Glyma.U011300 Secondary Identifier:  ? PAC:30535298
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.U011300 0.5kb upstream 0.5kb upstream 5606 true scaffold_21: 402256-407861 Glycine max
Glyma.U011300 0.5kb upstream 0.5kb upstream 500 false scaffold_21: 407362-407861 Glycine max
Glyma.U011300 0.5kb downstream 0.5kb downstream 5606 true scaffold_21: 401756-407361 Glycine max
Glyma.U011300 0.5kb downstream 0.5kb downstream 500 false scaffold_21: 401756-402255 Glycine max
Glyma.U011300 1.0kb upstream 1.0kb upstream 6106 true scaffold_21: 402256-408361 Glycine max
Glyma.U011300 1.0kb upstream 1.0kb upstream 1000 false scaffold_21: 407362-408361 Glycine max
Glyma.U011300 1.0kb downstream 1.0kb downstream 6106 true scaffold_21: 401256-407361 Glycine max
Glyma.U011300 1.0kb downstream 1.0kb downstream 1000 false scaffold_21: 401256-402255 Glycine max
Glyma.U011300 2.0kb upstream 2.0kb upstream 7106 true scaffold_21: 402256-409361 Glycine max
Glyma.U011300 2.0kb upstream 2.0kb upstream 2000 false scaffold_21: 407362-409361 Glycine max
Glyma.U011300 2.0kb downstream 2.0kb downstream 7106 true scaffold_21: 400256-407361 Glycine max
Glyma.U011300 2.0kb downstream 2.0kb downstream 2000 false scaffold_21: 400256-402255 Glycine max
Glyma.U011300 5.0kb upstream 5.0kb upstream 10106 true scaffold_21: 402256-412361 Glycine max
Glyma.U011300 5.0kb upstream 5.0kb upstream 5000 false scaffold_21: 407362-412361 Glycine max
Glyma.U011300 5.0kb downstream 5.0kb downstream 10106 true scaffold_21: 397256-407361 Glycine max
Glyma.U011300 5.0kb downstream 5.0kb downstream 5000 false scaffold_21: 397256-402255 Glycine max
Glyma.U011300 10.0kb upstream 10.0kb upstream 15106 true scaffold_21: 402256-417361 Glycine max
Glyma.U011300 10.0kb upstream 10.0kb upstream 10000 false scaffold_21: 407362-417361 Glycine max
Glyma.U011300 10.0kb downstream 10.0kb downstream 15106 true scaffold_21: 392256-407361 Glycine max
Glyma.U011300 10.0kb downstream 10.0kb downstream 10000 false scaffold_21: 392256-402255 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311807 5265 Fabidae View MSA
124050256 5270 Rosid View MSA
123736925 5271 Pentapetalae View MSA
122787092 5272 Eudicot View MSA
122043690 5273 Angiosperm View MSA
121347192 5274 Embryophyte View MSA
123380508 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.6862 0.0 40.8745   High
cufflinks 11.6104 0.0 35.3881    
cufflinks 8.22423 0.0 26.201    
cufflinks 7.10221 0.0 23.2014   Low
cufflinks 12.4645 0.0 37.7049    
cufflinks 10.5636 0.0 32.6921    
cufflinks 5.99286 0.0 20.1022   Low
cufflinks 8.1407 0.0 26.0528    
cufflinks 11.196 0.0 34.2293    
cufflinks 0.329       Low
cufflinks 0.322       Low
cufflinks 0.631        
cufflinks 1.393       High
cufflinks 1.602       High
cufflinks 0.243       Low
cufflinks 1.057        
cufflinks 0.584        
cufflinks 0.859        
cufflinks 0.586        
cufflinks 1.007        
cufflinks 0.334       Low
cufflinks 1.292        
cufflinks 1.86       High
cufflinks 0.434        
cufflinks 1.108        
cufflinks 0.594        

0 Strain