Gene : Glyma.U013300 G. max Wm82.a2.v1
Defline:  (1 of 1) PF00643//PF04640 - B-box zinc finger (zf-B_box) // PLATZ transcription factor (PLATZ) Genomic Order:  42
Name:  ? Glyma.U013300 Secondary Identifier:  ? PAC:30535287
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.U013300 0.5kb upstream 0.5kb upstream 2945 true scaffold_21: 851631-854575 Glycine max
Glyma.U013300 0.5kb upstream 0.5kb upstream 500 false scaffold_21: 854076-854575 Glycine max
Glyma.U013300 0.5kb downstream 0.5kb downstream 2945 true scaffold_21: 851131-854075 Glycine max
Glyma.U013300 0.5kb downstream 0.5kb downstream 500 false scaffold_21: 851131-851630 Glycine max
Glyma.U013300 1.0kb upstream 1.0kb upstream 3445 true scaffold_21: 851631-855075 Glycine max
Glyma.U013300 1.0kb upstream 1.0kb upstream 1000 false scaffold_21: 854076-855075 Glycine max
Glyma.U013300 1.0kb downstream 1.0kb downstream 3445 true scaffold_21: 850631-854075 Glycine max
Glyma.U013300 1.0kb downstream 1.0kb downstream 1000 false scaffold_21: 850631-851630 Glycine max
Glyma.U013300 2.0kb upstream 2.0kb upstream 4445 true scaffold_21: 851631-856075 Glycine max
Glyma.U013300 2.0kb upstream 2.0kb upstream 2000 false scaffold_21: 854076-856075 Glycine max
Glyma.U013300 2.0kb downstream 2.0kb downstream 4445 true scaffold_21: 849631-854075 Glycine max
Glyma.U013300 2.0kb downstream 2.0kb downstream 2000 false scaffold_21: 849631-851630 Glycine max
Glyma.U013300 5.0kb upstream 5.0kb upstream 7445 true scaffold_21: 851631-859075 Glycine max
Glyma.U013300 5.0kb upstream 5.0kb upstream 5000 false scaffold_21: 854076-859075 Glycine max
Glyma.U013300 5.0kb downstream 5.0kb downstream 7445 true scaffold_21: 846631-854075 Glycine max
Glyma.U013300 5.0kb downstream 5.0kb downstream 5000 false scaffold_21: 846631-851630 Glycine max
Glyma.U013300 10.0kb upstream 10.0kb upstream 12445 true scaffold_21: 851631-864075 Glycine max
Glyma.U013300 10.0kb upstream 10.0kb upstream 10000 false scaffold_21: 854076-864075 Glycine max
Glyma.U013300 10.0kb downstream 10.0kb downstream 12445 true scaffold_21: 841631-854075 Glycine max
Glyma.U013300 10.0kb downstream 10.0kb downstream 10000 false scaffold_21: 841631-851630 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122240600 5265 Fabidae Singleton cluster - no MSA
124069177 5270 Rosid View MSA
123750215 5271 Pentapetalae View MSA
122789413 5272 Eudicot View MSA
122043598 5273 Angiosperm View MSA
121349888 5274 Embryophyte View MSA
123428703 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.922179 0.0 5.50394   High
cufflinks 1.55755 0.0 10.2769   High
cufflinks 0.480806 0.0 3.10664    
cufflinks 0.420789 0.0 3.58109    
cufflinks 0.349677 0.0 2.57174    
cufflinks 0.563707 0.0 2.7417    
cufflinks 0.367687 0.0 2.46408    
cufflinks 0.195996 0.0 0.768778 Low Low
cufflinks 0.228035 0.0 1.63114 Low Low
cufflinks 0.023     Low  
cufflinks 0.556       High
cufflinks 0.198        
cufflinks 0.072     Low  
cufflinks 0.043     Low  
cufflinks 0.107        
cufflinks 0.031     Low  
cufflinks 0.051     Low  
cufflinks 0.102     Low  
cufflinks 0.352        
cufflinks 0.012     Low Low
cufflinks 0.723       High
cufflinks 0.019     Low Low
cufflinks 0.031     Low  
cufflinks 0.948       High
cufflinks 0.013     Low Low
cufflinks 0.596       High

0 Strain