Gene : Glyma.U013800 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31636:SF11 - SCARECROW-LIKE PROTEIN 22-RELATED Genomic Order:  47
Name:  ? Glyma.U013800 Secondary Identifier:  ? PAC:30535466
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.U013800 0.5kb upstream 0.5kb upstream 3539 true scaffold_21: 1245738-1249276 Glycine max
Glyma.U013800 0.5kb upstream 0.5kb upstream 500 false scaffold_21: 1248777-1249276 Glycine max
Glyma.U013800 0.5kb downstream 0.5kb downstream 3539 true scaffold_21: 1245238-1248776 Glycine max
Glyma.U013800 0.5kb downstream 0.5kb downstream 500 false scaffold_21: 1245238-1245737 Glycine max
Glyma.U013800 1.0kb upstream 1.0kb upstream 4039 true scaffold_21: 1245738-1249776 Glycine max
Glyma.U013800 1.0kb upstream 1.0kb upstream 1000 false scaffold_21: 1248777-1249776 Glycine max
Glyma.U013800 1.0kb downstream 1.0kb downstream 4039 true scaffold_21: 1244738-1248776 Glycine max
Glyma.U013800 1.0kb downstream 1.0kb downstream 1000 false scaffold_21: 1244738-1245737 Glycine max
Glyma.U013800 2.0kb upstream 2.0kb upstream 5039 true scaffold_21: 1245738-1250776 Glycine max
Glyma.U013800 2.0kb upstream 2.0kb upstream 2000 false scaffold_21: 1248777-1250776 Glycine max
Glyma.U013800 2.0kb downstream 2.0kb downstream 5039 true scaffold_21: 1243738-1248776 Glycine max
Glyma.U013800 2.0kb downstream 2.0kb downstream 2000 false scaffold_21: 1243738-1245737 Glycine max
Glyma.U013800 5.0kb upstream 5.0kb upstream 8039 true scaffold_21: 1245738-1253776 Glycine max
Glyma.U013800 5.0kb upstream 5.0kb upstream 5000 false scaffold_21: 1248777-1253776 Glycine max
Glyma.U013800 5.0kb downstream 5.0kb downstream 8039 true scaffold_21: 1240738-1248776 Glycine max
Glyma.U013800 5.0kb downstream 5.0kb downstream 5000 false scaffold_21: 1240738-1245737 Glycine max
Glyma.U013800 10.0kb upstream 10.0kb upstream 13039 true scaffold_21: 1245738-1258776 Glycine max
Glyma.U013800 10.0kb upstream 10.0kb upstream 10000 false scaffold_21: 1248777-1258776 Glycine max
Glyma.U013800 10.0kb downstream 10.0kb downstream 13039 true scaffold_21: 1235738-1248776 Glycine max
Glyma.U013800 10.0kb downstream 10.0kb downstream 10000 false scaffold_21: 1235738-1245737 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311488 5265 Fabidae View MSA
124067297 5270 Rosid View MSA
123748991 5271 Pentapetalae View MSA
122793941 5272 Eudicot View MSA
122048418 5273 Angiosperm View MSA
121350524 5274 Embryophyte View MSA
123381771 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.15926 0.0 14.0892    
cufflinks 8.01039 0.0 21.4411    
cufflinks 2.29672 0.0 6.83621   Low
cufflinks 11.0084 0.0 29.3806    
cufflinks 12.7626 0.0 34.148   High
cufflinks 4.88136 0.0 13.3685    
cufflinks 9.32948 0.0 24.8963    
cufflinks 4.99648 0.0 13.6569    
cufflinks 13.7827 0.0 36.9558   High
cufflinks 8.731     High  
cufflinks 1.543       Low
cufflinks 3.955        
cufflinks 17.652     High High
cufflinks 20.483     High High
cufflinks 6.045     High  
cufflinks 5.311        
cufflinks 1.657       Low
cufflinks 5.466        
cufflinks 10.353     High  
cufflinks 5.823        
cufflinks 1.5       Low
cufflinks 6.072        
cufflinks 6.285        
cufflinks 2.306        
cufflinks 5.2        
cufflinks 2.891        

0 Strain