Gene : Glyma.U016500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12084 - NUCLEAR PORE GLYCOPROTEIN P62-RELATED Genomic Order:  74
Name:  ? Glyma.U016500 Secondary Identifier:  ? PAC:30535282
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.U016500 0.5kb upstream 0.5kb upstream 21981 true scaffold_21: 2606936-2628916 Glycine max
Glyma.U016500 0.5kb upstream 0.5kb upstream 500 false scaffold_21: 2628417-2628916 Glycine max
Glyma.U016500 0.5kb downstream 0.5kb downstream 21981 true scaffold_21: 2606436-2628416 Glycine max
Glyma.U016500 0.5kb downstream 0.5kb downstream 500 false scaffold_21: 2606436-2606935 Glycine max
Glyma.U016500 1.0kb upstream 1.0kb upstream 22481 true scaffold_21: 2606936-2629416 Glycine max
Glyma.U016500 1.0kb upstream 1.0kb upstream 1000 false scaffold_21: 2628417-2629416 Glycine max
Glyma.U016500 1.0kb downstream 1.0kb downstream 22481 true scaffold_21: 2605936-2628416 Glycine max
Glyma.U016500 1.0kb downstream 1.0kb downstream 1000 false scaffold_21: 2605936-2606935 Glycine max
Glyma.U016500 2.0kb upstream 2.0kb upstream 23481 true scaffold_21: 2606936-2630416 Glycine max
Glyma.U016500 2.0kb upstream 2.0kb upstream 2000 false scaffold_21: 2628417-2630416 Glycine max
Glyma.U016500 2.0kb downstream 2.0kb downstream 23481 true scaffold_21: 2604936-2628416 Glycine max
Glyma.U016500 2.0kb downstream 2.0kb downstream 2000 false scaffold_21: 2604936-2606935 Glycine max
Glyma.U016500 5.0kb upstream 5.0kb upstream 26481 true scaffold_21: 2606936-2633416 Glycine max
Glyma.U016500 5.0kb upstream 5.0kb upstream 5000 false scaffold_21: 2628417-2633416 Glycine max
Glyma.U016500 5.0kb downstream 5.0kb downstream 26481 true scaffold_21: 2601936-2628416 Glycine max
Glyma.U016500 5.0kb downstream 5.0kb downstream 5000 false scaffold_21: 2601936-2606935 Glycine max
Glyma.U016500 10.0kb upstream 10.0kb upstream 31481 true scaffold_21: 2606936-2638416 Glycine max
Glyma.U016500 10.0kb upstream 10.0kb upstream 10000 false scaffold_21: 2628417-2638416 Glycine max
Glyma.U016500 10.0kb downstream 10.0kb downstream 31481 true scaffold_21: 2596936-2628416 Glycine max
Glyma.U016500 10.0kb downstream 10.0kb downstream 10000 false scaffold_21: 2596936-2606935 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310563 5265 Fabidae View MSA
124066082 5270 Rosid View MSA
123740016 5271 Pentapetalae View MSA
122794564 5272 Eudicot View MSA
122044271 5273 Angiosperm View MSA
121348594 5274 Embryophyte View MSA
123427472 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.37527 0.0 12.1112    
cufflinks 2.85256 0.0 13.0212    
cufflinks 1.09035 0.0 6.96843   Low
cufflinks 3.04004 0.0 13.5984    
cufflinks 3.21045 0.0 15.6513    
cufflinks 0.825078 0.0 3.37708   Low
cufflinks 2.9118 0.0 14.6669    
cufflinks 2.25979 0.0 12.017    
cufflinks 2.7074 0.0 12.1007    
cufflinks 0.173        
cufflinks 0.058       Low
cufflinks 0.2        
cufflinks 0.21        
cufflinks 0.331       High
cufflinks 0.155        
cufflinks 0.248        
cufflinks 0.112        
cufflinks 0.207        
cufflinks 0.437       High
cufflinks 0.199        
cufflinks 0.077       Low
cufflinks 0.241        
cufflinks 0.336       High
cufflinks 0.054     Low Low
cufflinks 0.246        
cufflinks 0.117        

0 Strain