Gene : Glyma.U016700 G. max Wm82.a2.v1
Defline:  (1 of 3) 1.13.11.71 - Carotenoid-9',10'-cleaving dioxygenase / Beta-carotene 9',10'-monooxygenase Genomic Order:  76
Name:  ? Glyma.U016700 Secondary Identifier:  ? PAC:30535318
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7101 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.U016700 0.5kb upstream 0.5kb upstream 6763 true scaffold_21: 2683303-2690065 Glycine max
Glyma.U016700 0.5kb upstream 0.5kb upstream 500 false scaffold_21: 2689566-2690065 Glycine max
Glyma.U016700 0.5kb downstream 0.5kb downstream 6763 true scaffold_21: 2682803-2689565 Glycine max
Glyma.U016700 0.5kb downstream 0.5kb downstream 500 false scaffold_21: 2682803-2683302 Glycine max
Glyma.U016700 1.0kb upstream 1.0kb upstream 7263 true scaffold_21: 2683303-2690565 Glycine max
Glyma.U016700 1.0kb upstream 1.0kb upstream 1000 false scaffold_21: 2689566-2690565 Glycine max
Glyma.U016700 1.0kb downstream 1.0kb downstream 7263 true scaffold_21: 2682303-2689565 Glycine max
Glyma.U016700 1.0kb downstream 1.0kb downstream 1000 false scaffold_21: 2682303-2683302 Glycine max
Glyma.U016700 2.0kb upstream 2.0kb upstream 8263 true scaffold_21: 2683303-2691565 Glycine max
Glyma.U016700 2.0kb upstream 2.0kb upstream 2000 false scaffold_21: 2689566-2691565 Glycine max
Glyma.U016700 2.0kb downstream 2.0kb downstream 8263 true scaffold_21: 2681303-2689565 Glycine max
Glyma.U016700 2.0kb downstream 2.0kb downstream 2000 false scaffold_21: 2681303-2683302 Glycine max
Glyma.U016700 5.0kb upstream 5.0kb upstream 11263 true scaffold_21: 2683303-2694565 Glycine max
Glyma.U016700 5.0kb upstream 5.0kb upstream 5000 false scaffold_21: 2689566-2694565 Glycine max
Glyma.U016700 5.0kb downstream 5.0kb downstream 11263 true scaffold_21: 2678303-2689565 Glycine max
Glyma.U016700 5.0kb downstream 5.0kb downstream 5000 false scaffold_21: 2678303-2683302 Glycine max
Glyma.U016700 10.0kb upstream 10.0kb upstream 16263 true scaffold_21: 2683303-2699565 Glycine max
Glyma.U016700 10.0kb upstream 10.0kb upstream 10000 false scaffold_21: 2689566-2699565 Glycine max
Glyma.U016700 10.0kb downstream 10.0kb downstream 16263 true scaffold_21: 2673303-2689565 Glycine max
Glyma.U016700 10.0kb downstream 10.0kb downstream 10000 false scaffold_21: 2673303-2683302 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300514 5265 Fabidae View MSA
124061510 5270 Rosid View MSA
123739443 5271 Pentapetalae View MSA
122788061 5272 Eudicot View MSA
122047914 5273 Angiosperm View MSA
123428919 5275 Viridiplantae View MSA
121344181 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0103478 0.0 0.046798 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0128764 0.0 0.0569952 Low Low
cufflinks 0.467169 0.0 1.71689    
cufflinks 1.85715 0.0 6.02854    
cufflinks 0.173133 0.0 0.666326 Low  
cufflinks 0.0181854 0.0 0.0783228 Low  
cufflinks 16.7186 0.0 44.6299   High
cufflinks 1.48153 0.0 4.95022    
cufflinks 0.125        
cufflinks 0.006     Low  
cufflinks 0.005     Low  
cufflinks 0.534       High
cufflinks 0.429       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.016     Low  
cufflinks 0.005     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.026     Low  

0 Strain