Gene : Glyma.20G249300 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11071:SF11 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE C Genomic Order:  2493
Name:  ? Glyma.20G249300 Secondary Identifier:  ? PAC:30521274
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G249300 0.5kb upstream 0.5kb upstream 3145 true Chr20: 47818406-47821550 Glycine max
Glyma.20G249300 0.5kb upstream 0.5kb upstream 500 false Chr20: 47821051-47821550 Glycine max
Glyma.20G249300 0.5kb downstream 0.5kb downstream 3145 true Chr20: 47817906-47821050 Glycine max
Glyma.20G249300 0.5kb downstream 0.5kb downstream 500 false Chr20: 47817906-47818405 Glycine max
Glyma.20G249300 1.0kb upstream 1.0kb upstream 3645 true Chr20: 47818406-47822050 Glycine max
Glyma.20G249300 1.0kb upstream 1.0kb upstream 1000 false Chr20: 47821051-47822050 Glycine max
Glyma.20G249300 1.0kb downstream 1.0kb downstream 3645 true Chr20: 47817406-47821050 Glycine max
Glyma.20G249300 1.0kb downstream 1.0kb downstream 1000 false Chr20: 47817406-47818405 Glycine max
Glyma.20G249300 2.0kb upstream 2.0kb upstream 4645 true Chr20: 47818406-47823050 Glycine max
Glyma.20G249300 2.0kb upstream 2.0kb upstream 2000 false Chr20: 47821051-47823050 Glycine max
Glyma.20G249300 2.0kb downstream 2.0kb downstream 4645 true Chr20: 47816406-47821050 Glycine max
Glyma.20G249300 2.0kb downstream 2.0kb downstream 2000 false Chr20: 47816406-47818405 Glycine max
Glyma.20G249300 5.0kb upstream 5.0kb upstream 7645 true Chr20: 47818406-47826050 Glycine max
Glyma.20G249300 5.0kb upstream 5.0kb upstream 5000 false Chr20: 47821051-47826050 Glycine max
Glyma.20G249300 5.0kb downstream 5.0kb downstream 7645 true Chr20: 47813406-47821050 Glycine max
Glyma.20G249300 5.0kb downstream 5.0kb downstream 5000 false Chr20: 47813406-47818405 Glycine max
Glyma.20G249300 10.0kb upstream 10.0kb upstream 12645 true Chr20: 47818406-47831050 Glycine max
Glyma.20G249300 10.0kb upstream 10.0kb upstream 10000 false Chr20: 47821051-47831050 Glycine max
Glyma.20G249300 10.0kb downstream 10.0kb downstream 12645 true Chr20: 47808406-47821050 Glycine max
Glyma.20G249300 10.0kb downstream 10.0kb downstream 10000 false Chr20: 47808406-47818405 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309632 5265 Fabidae View MSA
124069155 5270 Rosid View MSA
123741646 5271 Pentapetalae View MSA
122794502 5272 Eudicot View MSA
122048638 5273 Angiosperm View MSA
123428973 5275 Viridiplantae View MSA
121349242 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 97.2079 0.0 420.111 High High
cufflinks 70.7742 0.0 278.301 High High
cufflinks 33.252 0.0 117.935 High  
cufflinks 43.5407 0.0 155.862 High  
cufflinks 44.8083 0.0 161.308 High  
cufflinks 35.0134 0.0 121.946 High  
cufflinks 46.5748 0.0 167.914 High  
cufflinks 42.7922 0.0 151.715 High  
cufflinks 32.2732 0.0 111.622 High Low
cufflinks 8.093     High  
cufflinks 1.302       Low
cufflinks 9.434     High  
cufflinks 9.696     High  
cufflinks 12.875     High  
cufflinks 0.997       Low
cufflinks 27.625     High High
cufflinks 3.364        
cufflinks 9.252     High  
cufflinks 13.06     High  
cufflinks 30.082     High High
cufflinks 2.114       Low
cufflinks 27.404     High High
cufflinks 26.32     High High
cufflinks 1.842       Low
cufflinks 28.476     High High
cufflinks 3.539        

0 Strain