Gene : Glyma.20G243900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13711:SF213 - PROTEIN HMG-20 Genomic Order:  2439
Name:  ? Glyma.20G243900 Secondary Identifier:  ? PAC:30522174
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G243900 0.5kb upstream 0.5kb upstream 6020 true Chr20: 47412862-47418881 Glycine max
Glyma.20G243900 0.5kb upstream 0.5kb upstream 500 false Chr20: 47418382-47418881 Glycine max
Glyma.20G243900 0.5kb downstream 0.5kb downstream 6020 true Chr20: 47412362-47418381 Glycine max
Glyma.20G243900 0.5kb downstream 0.5kb downstream 500 false Chr20: 47412362-47412861 Glycine max
Glyma.20G243900 1.0kb upstream 1.0kb upstream 6520 true Chr20: 47412862-47419381 Glycine max
Glyma.20G243900 1.0kb upstream 1.0kb upstream 1000 false Chr20: 47418382-47419381 Glycine max
Glyma.20G243900 1.0kb downstream 1.0kb downstream 6520 true Chr20: 47411862-47418381 Glycine max
Glyma.20G243900 1.0kb downstream 1.0kb downstream 1000 false Chr20: 47411862-47412861 Glycine max
Glyma.20G243900 2.0kb upstream 2.0kb upstream 7520 true Chr20: 47412862-47420381 Glycine max
Glyma.20G243900 2.0kb upstream 2.0kb upstream 2000 false Chr20: 47418382-47420381 Glycine max
Glyma.20G243900 2.0kb downstream 2.0kb downstream 7520 true Chr20: 47410862-47418381 Glycine max
Glyma.20G243900 2.0kb downstream 2.0kb downstream 2000 false Chr20: 47410862-47412861 Glycine max
Glyma.20G243900 5.0kb upstream 5.0kb upstream 10520 true Chr20: 47412862-47423381 Glycine max
Glyma.20G243900 5.0kb upstream 5.0kb upstream 5000 false Chr20: 47418382-47423381 Glycine max
Glyma.20G243900 5.0kb downstream 5.0kb downstream 10520 true Chr20: 47407862-47418381 Glycine max
Glyma.20G243900 5.0kb downstream 5.0kb downstream 5000 false Chr20: 47407862-47412861 Glycine max
Glyma.20G243900 10.0kb upstream 10.0kb upstream 15520 true Chr20: 47412862-47428381 Glycine max
Glyma.20G243900 10.0kb upstream 10.0kb upstream 10000 false Chr20: 47418382-47428381 Glycine max
Glyma.20G243900 10.0kb downstream 10.0kb downstream 15520 true Chr20: 47402862-47418381 Glycine max
Glyma.20G243900 10.0kb downstream 10.0kb downstream 10000 false Chr20: 47402862-47412861 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301082 5265 Fabidae View MSA
124071278 5270 Rosid View MSA
123745117 5271 Pentapetalae View MSA
122793766 5272 Eudicot View MSA
122048952 5273 Angiosperm View MSA
121343849 5274 Embryophyte View MSA
123424352 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.90293 0.0 27.9582    
cufflinks 3.48814 0.0 19.7921    
cufflinks 1.59881 0.0 10.3745    
cufflinks 2.14988 0.0 15.8006    
cufflinks 1.14422 0.0 8.13534    
cufflinks 0.454382 0.0 3.65887   Low
cufflinks 8.5 0.0 42.834   High
cufflinks 0.850121 0.0 4.70099    
cufflinks 2.99566 0.0 18.0524    
cufflinks 0.049     Low  
cufflinks 0.032     Low  
cufflinks 0.135        
cufflinks 0.034     Low  
cufflinks 0.058     Low  
cufflinks 0.274        
cufflinks 0.366        
cufflinks 0.011     Low Low
cufflinks 0.176        
cufflinks 0.263        
cufflinks 0.706       High
cufflinks 0.028     Low  
cufflinks 0.591       High
cufflinks 0.441       High
cufflinks 0.045     Low  
cufflinks 0.583       High
cufflinks 0.015     Low Low

0 Strain