Gene : Glyma.20G245300 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR10277//PTHR10277:SF42 - HOMOCITRATE SYNTHASE-RELATED Genomic Order:  2453
Name:  ? Glyma.20G245300 Secondary Identifier:  ? PAC:30520046
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax BRANCHED-CHAIN-AA-SYN-PWY Glycine max pathologic  
Gmax LEUSYN-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G245300 0.5kb upstream 0.5kb upstream 7895 true Chr20: 47575583-47583477 Glycine max
Glyma.20G245300 0.5kb upstream 0.5kb upstream 500 false Chr20: 47575583-47576082 Glycine max
Glyma.20G245300 0.5kb downstream 0.5kb downstream 7895 true Chr20: 47576083-47583977 Glycine max
Glyma.20G245300 0.5kb downstream 0.5kb downstream 500 false Chr20: 47583478-47583977 Glycine max
Glyma.20G245300 1.0kb upstream 1.0kb upstream 8395 true Chr20: 47575083-47583477 Glycine max
Glyma.20G245300 1.0kb upstream 1.0kb upstream 1000 false Chr20: 47575083-47576082 Glycine max
Glyma.20G245300 1.0kb downstream 1.0kb downstream 8395 true Chr20: 47576083-47584477 Glycine max
Glyma.20G245300 1.0kb downstream 1.0kb downstream 1000 false Chr20: 47583478-47584477 Glycine max
Glyma.20G245300 2.0kb upstream 2.0kb upstream 9395 true Chr20: 47574083-47583477 Glycine max
Glyma.20G245300 2.0kb upstream 2.0kb upstream 2000 false Chr20: 47574083-47576082 Glycine max
Glyma.20G245300 2.0kb downstream 2.0kb downstream 9395 true Chr20: 47576083-47585477 Glycine max
Glyma.20G245300 2.0kb downstream 2.0kb downstream 2000 false Chr20: 47583478-47585477 Glycine max
Glyma.20G245300 5.0kb upstream 5.0kb upstream 12395 true Chr20: 47571083-47583477 Glycine max
Glyma.20G245300 5.0kb upstream 5.0kb upstream 5000 false Chr20: 47571083-47576082 Glycine max
Glyma.20G245300 5.0kb downstream 5.0kb downstream 12395 true Chr20: 47576083-47588477 Glycine max
Glyma.20G245300 5.0kb downstream 5.0kb downstream 5000 false Chr20: 47583478-47588477 Glycine max
Glyma.20G245300 10.0kb upstream 10.0kb upstream 17395 true Chr20: 47566083-47583477 Glycine max
Glyma.20G245300 10.0kb upstream 10.0kb upstream 10000 false Chr20: 47566083-47576082 Glycine max
Glyma.20G245300 10.0kb downstream 10.0kb downstream 17395 true Chr20: 47576083-47593477 Glycine max
Glyma.20G245300 10.0kb downstream 10.0kb downstream 10000 false Chr20: 47583478-47593477 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305643 5265 Fabidae View MSA
124073887 5270 Rosid View MSA
123749835 5271 Pentapetalae View MSA
122795041 5272 Eudicot View MSA
122042075 5273 Angiosperm View MSA
121343846 5274 Embryophyte View MSA
123424493 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.3271 0.0 103.377 High  
cufflinks 12.0708 0.0 40.6132   Low
cufflinks 30.9074 0.0 131.828 High High
cufflinks 19.3971 0.0 76.6953    
cufflinks 19.0027 0.0 65.934    
cufflinks 11.2088 0.0 37.8042   Low
cufflinks 33.3691 0.0 128.268 High High
cufflinks 11.8334 0.0 39.8616   Low
cufflinks 15.1432 0.0 51.3911    
cufflinks 1.379       Low
cufflinks 6.995     High High
cufflinks 1.728        
cufflinks 2.465        
cufflinks 3.372        
cufflinks 6.689     High High
cufflinks 2.688        
cufflinks 0.951       Low
cufflinks 1.456       Low
cufflinks 1.983        
cufflinks 3.841        
cufflinks 7.716     High High
cufflinks 2.398        
cufflinks 1.88        
cufflinks 5.896       High
cufflinks 3.25        
cufflinks 2.319        

0 Strain