Gene : Glyma.20G247400 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR11654//PTHR11654:SF146 - OLIGOPEPTIDE TRANSPORTER-RELATED Genomic Order:  2474
Name:  ? Glyma.20G247400 Secondary Identifier:  ? PAC:30523455
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G247400 0.5kb upstream 0.5kb upstream 3557 true Chr20: 47689783-47693339 Glycine max
Glyma.20G247400 0.5kb upstream 0.5kb upstream 500 false Chr20: 47689783-47690282 Glycine max
Glyma.20G247400 0.5kb downstream 0.5kb downstream 3557 true Chr20: 47690283-47693839 Glycine max
Glyma.20G247400 0.5kb downstream 0.5kb downstream 500 false Chr20: 47693340-47693839 Glycine max
Glyma.20G247400 1.0kb upstream 1.0kb upstream 4057 true Chr20: 47689283-47693339 Glycine max
Glyma.20G247400 1.0kb upstream 1.0kb upstream 1000 false Chr20: 47689283-47690282 Glycine max
Glyma.20G247400 1.0kb downstream 1.0kb downstream 4057 true Chr20: 47690283-47694339 Glycine max
Glyma.20G247400 1.0kb downstream 1.0kb downstream 1000 false Chr20: 47693340-47694339 Glycine max
Glyma.20G247400 2.0kb upstream 2.0kb upstream 5057 true Chr20: 47688283-47693339 Glycine max
Glyma.20G247400 2.0kb upstream 2.0kb upstream 2000 false Chr20: 47688283-47690282 Glycine max
Glyma.20G247400 2.0kb downstream 2.0kb downstream 5057 true Chr20: 47690283-47695339 Glycine max
Glyma.20G247400 2.0kb downstream 2.0kb downstream 2000 false Chr20: 47693340-47695339 Glycine max
Glyma.20G247400 5.0kb upstream 5.0kb upstream 8057 true Chr20: 47685283-47693339 Glycine max
Glyma.20G247400 5.0kb upstream 5.0kb upstream 5000 false Chr20: 47685283-47690282 Glycine max
Glyma.20G247400 5.0kb downstream 5.0kb downstream 8057 true Chr20: 47690283-47698339 Glycine max
Glyma.20G247400 5.0kb downstream 5.0kb downstream 5000 false Chr20: 47693340-47698339 Glycine max
Glyma.20G247400 10.0kb upstream 10.0kb upstream 13057 true Chr20: 47680283-47693339 Glycine max
Glyma.20G247400 10.0kb upstream 10.0kb upstream 10000 false Chr20: 47680283-47690282 Glycine max
Glyma.20G247400 10.0kb downstream 10.0kb downstream 13057 true Chr20: 47690283-47703339 Glycine max
Glyma.20G247400 10.0kb downstream 10.0kb downstream 10000 false Chr20: 47693340-47703339 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303533 5265 Fabidae View MSA
124066673 5270 Rosid View MSA
123753488 5271 Pentapetalae View MSA
122795216 5272 Eudicot View MSA
122048463 5273 Angiosperm View MSA
121351774 5274 Embryophyte View MSA
123382317 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.02058 0.0 5.64527    
cufflinks 0.649195 0.0 3.83741    
cufflinks 0.172787 0.0 0.8536 Low  
cufflinks 0.567979 0.0 2.56368    
cufflinks 0.0358066 0.0 0.149368 Low Low
cufflinks 0.0194591 0.0 0.0870943 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 2.5524 0.0 10.4973   High
cufflinks 0.0937452 0.0 0.370457 Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.059     Low  
cufflinks 0.016     Low  
cufflinks 0.024     Low  
cufflinks 0.003     Low Low
cufflinks 1.176       High
cufflinks 0.005     Low  
cufflinks 0.204        
cufflinks 0.039     Low  
cufflinks 0.233        
cufflinks 0.003     Low Low
cufflinks 0.394       High
cufflinks 0.043     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.269       High
cufflinks 0.002     Low Low

0 Strain