Gene : Glyma.U031100 G. max Wm82.a2.v1
Defline:  (1 of 4) PF15811 - Small VCP/p97-interacting protein (SVIP) Genomic Order:  26
Name:  ? Glyma.U031100 Secondary Identifier:  ? PAC:30523562
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Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.U031100 0.5kb upstream 0.5kb upstream 3040 true scaffold_28: 332007-335046 Glycine max
Glyma.U031100 0.5kb upstream 0.5kb upstream 500 false scaffold_28: 332007-332506 Glycine max
Glyma.U031100 0.5kb downstream 0.5kb downstream 3040 true scaffold_28: 332507-335546 Glycine max
Glyma.U031100 0.5kb downstream 0.5kb downstream 500 false scaffold_28: 335047-335546 Glycine max
Glyma.U031100 1.0kb upstream 1.0kb upstream 3540 true scaffold_28: 331507-335046 Glycine max
Glyma.U031100 1.0kb upstream 1.0kb upstream 1000 false scaffold_28: 331507-332506 Glycine max
Glyma.U031100 1.0kb downstream 1.0kb downstream 3540 true scaffold_28: 332507-336046 Glycine max
Glyma.U031100 1.0kb downstream 1.0kb downstream 1000 false scaffold_28: 335047-336046 Glycine max
Glyma.U031100 2.0kb upstream 2.0kb upstream 4540 true scaffold_28: 330507-335046 Glycine max
Glyma.U031100 2.0kb upstream 2.0kb upstream 2000 false scaffold_28: 330507-332506 Glycine max
Glyma.U031100 2.0kb downstream 2.0kb downstream 4540 true scaffold_28: 332507-337046 Glycine max
Glyma.U031100 2.0kb downstream 2.0kb downstream 2000 false scaffold_28: 335047-337046 Glycine max
Glyma.U031100 5.0kb upstream 5.0kb upstream 7540 true scaffold_28: 327507-335046 Glycine max
Glyma.U031100 5.0kb upstream 5.0kb upstream 5000 false scaffold_28: 327507-332506 Glycine max
Glyma.U031100 5.0kb downstream 5.0kb downstream 7540 true scaffold_28: 332507-340046 Glycine max
Glyma.U031100 5.0kb downstream 5.0kb downstream 5000 false scaffold_28: 335047-340046 Glycine max
Glyma.U031100 10.0kb upstream 10.0kb upstream 12540 true scaffold_28: 322507-335046 Glycine max
Glyma.U031100 10.0kb upstream 10.0kb upstream 10000 false scaffold_28: 322507-332506 Glycine max
Glyma.U031100 10.0kb downstream 10.0kb downstream 12540 true scaffold_28: 332507-345046 Glycine max
Glyma.U031100 10.0kb downstream 10.0kb downstream 10000 false scaffold_28: 335047-345046 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303094 5265 Fabidae View MSA
124072896 5270 Rosid View MSA
123736483 5271 Pentapetalae View MSA
122789828 5272 Eudicot View MSA
122050042 5273 Angiosperm View MSA
121311703 5274 Embryophyte View MSA
123348966 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.0604 0.0 50.9943    
cufflinks 14.7512 0.0 42.6392    
cufflinks 16.9532 0.0 48.124    
cufflinks 18.1548 0.0 51.1158    
cufflinks 7.37286 0.0 23.307   Low
cufflinks 37.1087 0.0 99.5409 High High
cufflinks 21.4224 0.0 59.3586    
cufflinks 13.4999 0.0 39.3854    
cufflinks 10.2892 0.0 31.1436    
cufflinks 8.699     High High
cufflinks 5.246        
cufflinks 5.012        
cufflinks 2.153       Low
cufflinks 1.118       Low
cufflinks 5.205     High  
cufflinks 5.018        
cufflinks 11.031     High High
cufflinks 5.716        
cufflinks 2.846        
cufflinks 4.438        
cufflinks 4.613        
cufflinks 4.169        
cufflinks 4.597        
cufflinks 5.009        
cufflinks 4.69        
cufflinks 6.12        

0 Strain